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SCNpilot_cont_500_bf_scaffold_5541

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_5541_1
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..2800
DNA (2799bp) protein (933aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
ribonuclease, Rne/Rng family; K08300 ribonuclease E [EC:3.1.26.12] rbh
ribonuclease E n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000360392D rbh
SCNpilot_cont_500_bf_scaffold_5541_2
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2877..3524)
DNA (648bp) protein (216aa)
LuxR/UhpA family transcriptional regulator n=14 Tax=Xanthomonas RepID=G2LTY3_9XANT rbh
Response regulator {ECO:0000313|EMBL:EYR69670.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
gacA; LuxR/UhpA family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_5541_3
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3785..4483)
DNA (699bp) protein (233aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00036F12B4 rbh
Membrane protein {ECO:0000313|EMBL:AHY59454.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
phosphoesterase PA-phosphatase-like protein rbh
SCNpilot_cont_500_bf_scaffold_5541_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4464..5738)
DNA (1275bp) protein (425aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] rbh
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5U3I3_STEMA rbh
SCNpilot_cont_500_bf_scaffold_5541_5
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5765..7522
DNA (1758bp) protein (586aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
regS; two-component system sensor protein; K15011 two-component system, sensor histidine kinase RegB [EC:2.7.13.3] rbh
histidine kinase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E04D73 rbh
SCNpilot_cont_500_bf_scaffold_5541_6
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7556..8323)
DNA (768bp) protein (256aa)
short-chain dehydrogenase n=1 Tax=Xanthomonas sacchari RepID=UPI000262B35B rbh
short chain dehydrogenase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABM31811.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_cont_500_bf_scaffold_5541_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8467..9111)
DNA (645bp) protein (215aa)
acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase (EC:4.2.1.3); K01682 aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
Aconitate hydratase B {ECO:0000256|PIRNR:PIRNR036687}; EC=4.2.1.3 {ECO:0000256|PIRNR:PIRNR036687};; EC=4.2.1.99 {ECO:0000256|PIRNR:PIRNR036687};; 2-methylisocitrate dehydratase {ECO:0000256|PIRNR:PIRNR036687}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
Aconitate hydratase 2 n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FQ97_STRMK
Displaying 7 items

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