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SCNpilot_cont_500_bf_scaffold_5706

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_5706_1
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..448
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037B1F61
Uncharacterized protein {ECO:0000313|EMBL:AHY58004.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
tol-pal system protein YbgF
SCNpilot_cont_500_bf_scaffold_5706_2
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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544..1245
DNA (702bp) protein (234aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
7-carboxy-7-deazaguanine synthase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K061_STEMA rbh
radical SAM domain-containing protein; K10026 queuosine biosynthesis protein QueE rbh
SCNpilot_cont_500_bf_scaffold_5706_3
Xanthomonas fuscans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1325..1990
DNA (666bp) protein (222aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=427081 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas fuscan
hypothetical protein n=1 Tax=Xanthomonas arboricola RepID=UPI0002FC400F rbh
ATPase; K06920 queuosine biosynthesis protein QueC rbh
SCNpilot_cont_500_bf_scaffold_5706_trna_1
unknown

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2144..2216
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_5706_4
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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2219..2917
DNA (699bp) protein (233aa)
RNA polymerase, sigma-24 subunit, ECF subfamily id=2862880 bin=GWF1_Xanthomonadales_69_6 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein
Tax=GWF1_Xanthomonadales_69_6_curated
SCNpilot_cont_500_bf_scaffold_5706_5
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2917..4338
DNA (1422bp) protein (474aa)
serine/threonine protein kinase; K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1]
Uncharacterized protein {ECO:0000313|EMBL:AKC87484.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
Serine/threonine protein kinase id=2862879 bin=GWF1_Xanthomonadales_69_6 species=Frateuria aurantia genus=Frateuria taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
SCNpilot_cont_500_bf_scaffold_5706_6
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4323..5633
DNA (1311bp) protein (437aa)
serine/threonine protein kinase; K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1]
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FFD1F0
Uncharacterized protein {ECO:0000313|EMBL:AKC87484.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
SCNpilot_cont_500_bf_scaffold_5706_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5641..7446)
DNA (1806bp) protein (602aa)
ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12] rbh
ATP-dependent DNA helicase RecQ n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TIQ5_STEMA rbh
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:EMI49052.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
SCNpilot_cont_500_bf_scaffold_5706_8
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7896..8444)
DNA (549bp) protein (183aa)
Ferritin Dps family protein n=2 Tax=Stenotrophomonas maltophilia RepID=B4ST10_STRM5 rbh
ferritin Dps family protein; K04047 starvation-inducible DNA-binding protein rbh
Ferritin Dps family protein {ECO:0000313|EMBL:ACF52801.1}; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
SCNpilot_cont_500_bf_scaffold_5706_9
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8533..11217
DNA (2685bp) protein (895aa)
ATP dependent RNA helicase; K03578 ATP-dependent helicase HrpA [EC:3.6.4.13]
ATP dependent RNA helicase n=2 Tax=Xanthomonas campestris pv. campestris RepID=Q4UXI9_XANC8
Strain LMCP11 contig_2, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29838.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
SCNpilot_cont_500_bf_scaffold_5706_10
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11178..12602
DNA (1425bp) protein (475aa)
hrpA; ATP-dependent helicase HrpA; K03578 ATP-dependent helicase HrpA [EC:3.6.4.13]
DEAD/DEAH box helicase n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A04487
ATP-dependent helicase HrpA {ECO:0000313|EMBL:AEL08179.1}; TaxID=990315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. raphani 756C.;"
SCNpilot_cont_500_bf_scaffold_5706_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12645..13256)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3G2I0_STEMA
Uncharacterized protein {ECO:0000313|EMBL:EJP76808.1}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5706_12
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13270..13782)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Xanthomonadaceae RepID=UPI00029B47A1
Putative secreted protein {ECO:0000313|EMBL:EZP47599.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_5706_13
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13846..15351
DNA (1506bp) protein (502aa)
RelA/SpoT family protein (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5] rbh
ATP:GTP 3''''-pyrophosphotransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000369450B rbh
RelA/SpoT family protein {ECO:0000313|EMBL:EZP47598.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
Displaying 14 items

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