ggKbase home page

SCNpilot_cont_500_bf_scaffold_11765

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_11765_1
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(61..2349)
DNA (2289bp) protein (763aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="
5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase (EC:2.1.1.14); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] rbh
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E96A52 rbh
SCNpilot_cont_500_bf_scaffold_11765_2
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2862..3215)
DNA (354bp) protein (118aa)
Multidrug transporter n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5L4Q2_STEMA
Multidrug transporter {ECO:0000313|EMBL:EQM87279.1}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
Ethidium bromide-methyl viologen resistance protein EmrE; K03297 small multidrug resistance protein, SMR family
SCNpilot_cont_500_bf_scaffold_11765_3
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3323..3844
DNA (522bp) protein (174aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
tRNA-dihydrouridine synthase A; K05539 tRNA-dihydrouridine synthase A [EC:1.-.-.-]
tRNA-dihydrouridine synthase A n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030C1DB8
SCNpilot_cont_500_bf_scaffold_11765_4
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3879..4262
DNA (384bp) protein (128aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
yjbN family TIM-barrel protein; K05539 tRNA-dihydrouridine synthase A [EC:1.-.-.-]
tRNA-dihydrouridine synthase n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TVV4_STEMA
SCNpilot_cont_500_bf_scaffold_11765_5
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4450..4821
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0SUN8_XANCT
Uncharacterized protein {ECO:0000313|EMBL:CCP39809.1}; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. translucens DSM 18974.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_11765_6
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4893..5576
DNA (684bp) protein (228aa)
Two component transcriptional regulator, winged helix family n=12 Tax=Stenotrophomonas RepID=B4ST91_STRM5 rbh
DNA-binding response regulator; K07660 two-component system, OmpR family, response regulator PhoP rbh
DNA-binding response regulator {ECO:0000313|EMBL:EZP42947.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
SCNpilot_cont_500_bf_scaffold_11765_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5598..6362
DNA (765bp) protein (255aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
integral membrane sensor signal transduction histidine kinase; K07637 two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
ATPase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003806700
SCNpilot_cont_500_bf_scaffold_11765_8
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6377..6973
DNA (597bp) protein (199aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
phoQ; Sensor protein PhoQ (EC:2.7.13.3); K07637 two-component system, OmpR family, sensor histidine kinase PhoQ [EC:2.7.13.3]
PhoQ n=1 Tax=Stenotrophomonas maltophilia RepID=B8K2M5_STEMA
SCNpilot_cont_500_bf_scaffold_11765_9
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7062..7865)
DNA (804bp) protein (268aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WVU5_PSEUU rbh
hypothetical protein; K09933 hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:ADV28368.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCNpilot_cont_500_bf_scaffold_11765_10
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7832..8134)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003635B68
Uncharacterized protein {ECO:0000313|EMBL:AHY60688.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_11765_11
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8151..9101
DNA (951bp) protein (317aa)
birA; biotin--[acetyl-CoA-carboxylase] ligase (EC:6.3.4.15); K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] rbh
biotin-protein ligase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037D43FA rbh
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin operon repressor {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
SCNpilot_cont_500_bf_scaffold_11765_12
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9098..9835
DNA (738bp) protein (246aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
pantothenate kinase; K03525 type III pantothenate kinase [EC:2.7.1.33] rbh
Type III pantothenate kinase n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KJY9_STEMA rbh
SCNpilot_cont_500_bf_scaffold_11765_13
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9845..10609
DNA (765bp) protein (255aa)
sporulation protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D5EF77
Sporulation protein {ECO:0000313|EMBL:AHY60685.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_11765_trna_1
unknown

Not on your lists

10652..10724
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_11765_14
unknown

Not on your lists

comp(11358..11576)
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_11765_15
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12031..12831)
DNA (801bp) protein (267aa)
Putative virulence-associated autotransporter protein n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FQ23_STRMK
putative virulence-associated autotransporter protein
Putative virulence-associated autotransporter protein {ECO:0000313|EMBL:CAQ44453.1}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
Displaying 16 items

View Taxonomy