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SCNpilot_cont_500_bf_scaffold_6961

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_6961_1
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..722)
DNA (720bp) protein (240aa)
Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
SCNpilot_cont_500_bf_scaffold_6961_2
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1160..1540
DNA (381bp) protein (127aa)
signal recognition particle n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F6A8F5
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
ffh; putative signal recognition protein (signal recognition particle-like); K03106 signal recognition particle subunit SRP54
SCNpilot_cont_500_bf_scaffold_6961_3
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1616..2686
DNA (1071bp) protein (357aa)
putative 2-nitropropane dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16] rbh
Putative 2-nitropropane dioxygenase n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FUB1_STRMK rbh
2-nitropropane dioxygenase {ECO:0000313|EMBL:AHY59790.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
SCNpilot_cont_500_bf_scaffold_6961_4
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2683..3477
DNA (795bp) protein (265aa)
aminotransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F301E5
Aminotransferase {ECO:0000313|EMBL:AHY59789.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_6961_5
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3590..3850
DNA (261bp) protein (87aa)
30S ribosomal protein S16 n=1 Tax=Xanthomonas RepID=UPI000262A8B1
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
SCNpilot_cont_500_bf_scaffold_6961_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3889..4404
DNA (516bp) protein (172aa)
Ribosome maturation factor RimM n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5U4C7_STEMA
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
rimM; 16S rRNA-processing protein RimM; K02860 16S rRNA processing protein RimM
SCNpilot_cont_500_bf_scaffold_6961_7
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4410..5189
DNA (780bp) protein (260aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] rbh
tRNA (guanine-N1)-methyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F11E2D rbh
SCNpilot_cont_500_bf_scaffold_6961_8
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5322..5729
DNA (408bp) protein (136aa)
50S ribosomal protein L19 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EEC0CB
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19
SCNpilot_cont_500_bf_scaffold_6961_9
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5958..7478)
DNA (1521bp) protein (507aa)
Transcriptional regulator, DeoR family n=2 Tax=Stenotrophomonas maltophilia RepID=B4SM72_STRM5 rbh
Glycerol-3-phosphate regulon repressor {ECO:0000313|EMBL:CCP18816.1}; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
DNA-binding transcriptional regulator AgaR; K02081 DeoR family transcriptional regulator, aga operon transcriptional repressor rbh
SCNpilot_cont_500_bf_scaffold_6961_10
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7475..7948)
DNA (474bp) protein (158aa)
D-tagatose-bisphosphate aldolase non-catalytic subunit; K00917 tagatose 6-phosphate kinase [EC:2.7.1.144]
D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JVY4_STEMA
D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit {ECO:0000313|EMBL:AEM53176.1}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
SCNpilot_cont_500_bf_scaffold_6961_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7965..8903)
DNA (939bp) protein (313aa)
ROK family protein; K00884 N-acetylglucosamine kinase [EC:2.7.1.59] rbh
ROK family transcriptional regulator n=1 Tax=Pseudomonas geniculata RepID=UPI00029B1837 rbh
Uncharacterized protein {ECO:0000313|EMBL:EJP78801.1}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
SCNpilot_cont_500_bf_scaffold_6961_12
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8896..10050)
DNA (1155bp) protein (385aa)
agaS; putative sugar isomerase; K02082 tagatose-6-phosphate ketose/aldose isomerase [EC:5.-.-.-] rbh
Uncharacterized protein n=3 Tax=Stenotrophomonas maltophilia RepID=J7USB0_STEMA rbh
Uncharacterized protein {ECO:0000313|EMBL:EJP78800.1}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
SCNpilot_cont_500_bf_scaffold_6961_13
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10363..11757
DNA (1395bp) protein (465aa)
Glycosyl hydrolase, family 31 n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L7R3_9GAMM
Glycosyl hydrolase, family 31 {ECO:0000313|EMBL:EED38053.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
glycoside hydrolase family protein
Displaying 13 items

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