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SCNpilot_cont_500_bf_scaffold_4425

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4425_1
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1048
DNA (1047bp) protein (349aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FDF1_9RHIZ rbh
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EHS49142.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_cont_500_bf_scaffold_4425_2
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1127..2317)
DNA (1191bp) protein (397aa)
Putative oxidoreductase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LP38_RHITR
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:AGB72481.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_4425_3
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2345..3397)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NI28_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF20539.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4425_4
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3540..4487)
DNA (948bp) protein (316aa)
Putative sugar ABC transporter, substrate-binding protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AFP9_RHIET rbh
Putative sugar ABC transporter, substrate-binding protein {ECO:0000313|EMBL:EGE56711.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
sugar ABC transporter substrate-binding protein; K10439 ribose transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_4425_5
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4563..5573)
DNA (1011bp) protein (337aa)
Ribose transport system permease protein {ECO:0000313|EMBL:CDM59305.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CDM59305.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
Monosaccharide-transporting ATPase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I7A5_9RHIZ rbh
sugar ABC transporter, permease; K10440 ribose transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_4425_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5624..7108)
DNA (1485bp) protein (495aa)
ABC transporter; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
ABC transporter related n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6AWQ3_RHILS
ABC transporter related {ECO:0000313|EMBL:ACS57950.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_cont_500_bf_scaffold_4425_7
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7265..8311
DNA (1047bp) protein (349aa)
LacI family transcriptional regulator n=1 Tax=Rhizobium sp. Pop5 RepID=K0VGT8_9RHIZ rbh
LacI family transcriptional repressor CytR {ECO:0000313|EMBL:AIC29035.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
cytR; LacI family transcriptional repressor CytR rbh
SCNpilot_cont_500_bf_scaffold_4425_8
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8343..8768)
DNA (426bp) protein (142aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
xylA; D-xylose isomerase (D-xylulose keto-isomerase) (EC:5.3.1.5)
Xylose isomerase n=1 Tax=Rhizobium sp. RepID=L0NHI6_RHISP
SCNpilot_cont_500_bf_scaffold_4425_9
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8765..9640)
DNA (876bp) protein (292aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
xylose isomerase (EC:5.3.1.5); K01805 xylose isomerase [EC:5.3.1.5]
xylose isomerase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003732581
SCNpilot_cont_500_bf_scaffold_4425_10
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9924..11378)
DNA (1455bp) protein (485aa)
xylB; xylulose kinase (EC:2.7.1.17); K00854 xylulokinase [EC:2.7.1.17]
D-xylulose kinase n=1 Tax=Rhizobium sp. CF142 RepID=J2L6N4_9RHIZ
D-xylulose kinase {ECO:0000313|EMBL:EJJ29167.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_cont_500_bf_scaffold_4425_11
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11407..12429)
DNA (1023bp) protein (341aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Rhizobium sp. CF142 RepID=J1SV93_9RHIZ
LacI family transcriptional regulator protein {ECO:0000313|EMBL:AJD42871.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_4425_12
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12606..13358
DNA (753bp) protein (251aa)
Transcriptional regulator n=1 Tax=Phyllobacterium sp. YR531 RepID=J2VJB4_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:KKB08300.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
GntR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_4425_13
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13475..14215
DNA (741bp) protein (247aa)
sugar ABC transporter ATP-binding protein; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
Sugar ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89VC6_BRADU rbh
Sugar (Ribose) ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFC64558.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCNpilot_cont_500_bf_scaffold_4425_14
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14215..15240
DNA (1026bp) protein (342aa)
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YBS4_9BRAD rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:KKB10791.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
sugar ABC transporter permease; K10440 ribose transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_4425_15
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15330..16274
DNA (945bp) protein (315aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YUF7_9RHIZ rbh
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB10790.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ribose ABC transporter substrate-binding protein; K02058 simple sugar transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_4425_16
Chromobacterium violaceum, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16331..17083)
DNA (753bp) protein (251aa)
Putative short-chain dehydrogenase/reductase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z6Z7_AZOL4 rbh
Short-chain dehydrogenase {ECO:0000313|EMBL:KJH67982.1}; TaxID=536 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium violaceum.;"
putative short-chain dehydrogenase/reductase rbh
Displaying 16 items

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