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SCNpilot_cont_500_bf_scaffold_4712

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4712_1
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..255)
DNA (255bp) protein (85aa)
Chemoreceptor McpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHS7_9RHIZ
Chemotaxis protein {ECO:0000313|EMBL:KEQ08443.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
mcpV2; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_cont_500_bf_scaffold_4712_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

777..2360
DNA (1584bp) protein (528aa)
ggt; gamma-glutamyltransferase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] rbh
Gamma-glutamyltransferase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JIX9_AGRRK rbh
Gamma-glutamyltransferase {ECO:0000313|EMBL:ACM29871.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_500_bf_scaffold_4712_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2379..2864
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W0P1_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJC79221.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4712_4
unknown

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2965..3273
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4712_5
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3248..3889)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MCQ6_RHISN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACP27354.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_cont_500_bf_scaffold_4712_6
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3958..4827)
DNA (870bp) protein (290aa)
permease n=1 Tax=Rhizobium leguminosarum RepID=UPI00036352F0
Uncharacterized protein {ECO:0000313|EMBL:EJT03121.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
transmembrane protein; K11939 inner membrane transporter RhtA
SCNpilot_cont_500_bf_scaffold_4712_7
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5003..6028)
DNA (1026bp) protein (342aa)
Acetylpolyamine aminohydrolase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QY67_9RHIZ rbh
Acetylpolyamine aminohydrolase {ECO:0000313|EMBL:EKF60477.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
acetylpolyamine aminohydrolase protein
SCNpilot_cont_500_bf_scaffold_4712_8
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6117..6635)
DNA (519bp) protein (173aa)
ttr; Acetyltransferase (EC:2.3.1.-)
GCN5-related N-acetyltransferase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F0C7_9RHIZ
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EHS53870.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
SCNpilot_cont_500_bf_scaffold_4712_9
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6651..7229)
DNA (579bp) protein (193aa)
Transcriptional regulatory protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q5L7_9RHIZ
Transcriptional regulatory protein {ECO:0000313|EMBL:EKF60480.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
putative transcriptional regulator
SCNpilot_cont_500_bf_scaffold_4712_10
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7320..7784)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NNF1_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF21942.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4712_11
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7848..8438
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q9E7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EKF60494.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4712_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8523..9794
DNA (1272bp) protein (424aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
Elongation factor 4 n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XXL3_RHIRD
lepA; GTP-binding elongation factor
SCNpilot_cont_500_bf_scaffold_4712_13
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9788..10264
DNA (477bp) protein (159aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
elongation factor 4 n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036900CE
lepA; GTP-binding protein LepA; K03596 GTP-binding protein LepA
SCNpilot_cont_500_bf_scaffold_4712_14
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10300..10767)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V6B2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN89380.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein; K06886 hemoglobin
SCNpilot_cont_500_bf_scaffold_4712_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10880..11863
DNA (984bp) protein (328aa)
membrane protein n=1 Tax=Rhizobium gallicum RepID=UPI00036425B2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEC72184.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
SCNpilot_cont_500_bf_scaffold_4712_16
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11929..12543)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QH82_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF60471.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
conserved exported protein of unknown function
SCNpilot_cont_500_bf_scaffold_4712_17
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12640..13464)
DNA (825bp) protein (275aa)
2-hydroxymuconic semialdehyde hydrolase n=1 Tax=Rhizobium leguminosarum RepID=UPI000367D00F rbh
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EJC68983.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_4712_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13681..14187
DNA (507bp) protein (169aa)
translation initiation factor IF-3 n=1 Tax=Rhizobium mongolense RepID=UPI0003B560B7
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
translation initiation factor IF-3; K02520 translation initiation factor IF-3
SCNpilot_cont_500_bf_scaffold_4712_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14405..14608
DNA (204bp) protein (68aa)
50S ribosomal protein L35 n=1 Tax=Rhizobium sp. CF080 RepID=J2TJK7_9RHIZ
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
SCNpilot_cont_500_bf_scaffold_4712_20
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14650..15054
DNA (405bp) protein (135aa)
50S ribosomal protein L20 n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=RL20_SINMW
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
50S ribosomal protein L20 {ECO:0000255|HAMAP-Rule:MF_00382}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_cont_500_bf_scaffold_4712_21
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


15194..15784
DNA (591bp) protein (197aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
pheS; phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Rhizobium sp. RepID=L0NLK1_RHISP
Displaying 21 items

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