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SCNpilot_cont_500_bf_scaffold_5300

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_5300_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..398)
DNA (396bp) protein (132aa)
Taurine import ATP-binding protein TauB {ECO:0000256|HAMAP-Rule:MF_01714}; EC=3.6.3.36 {ECO:0000256|HAMAP-Rule:MF_01714};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Taurine import ATP-binding protein TauB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUM3_9RHIZ
tauB; ABC transporter ATP-binding protein
SCNpilot_cont_500_bf_scaffold_5300_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(555..1571)
DNA (1017bp) protein (339aa)
taurine ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036103DB rbh
Taurine-binding periplasmic protein TauA {ECO:0000313|EMBL:EYR79273.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
taurine ABC transporter periplasmic binding protein; K15551 taurine transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_5300_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1702..3174
DNA (1473bp) protein (491aa)
Transcriptional regulator, GntR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUB4_9RHIZ rbh
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EYR79274.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
DeoR family transcriptional regulator; K00375 GntR family transcriptional regulator / MocR family aminotransferase rbh
SCNpilot_cont_500_bf_scaffold_5300_4
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3389..3562)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0I2V8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB19662.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
SCNpilot_cont_500_bf_scaffold_5300_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4243..5136
DNA (894bp) protein (298aa)
Transcriptional regulator, IclR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWZ0_9RHIZ rbh
Transcriptional regulator, IclR family {ECO:0000313|EMBL:EYR79407.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
IclR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_5300_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5153..6547)
DNA (1395bp) protein (465aa)
D-hydantoinase HyuA {ECO:0000313|EMBL:EYR79408.1}; EC=3.5.2.- {ECO:0000313|EMBL:EYR79408.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phenylhydantoinase; K01464 dihydropyrimidinase [EC:3.5.2.2]
D-hydantoinase HyuA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGY0_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_5300_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6605..7177)
DNA (573bp) protein (191aa)
3-oxoacyl-[acyl-carrier-protein] reductase FabG {ECO:0000313|EMBL:EYR79409.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EYR79409.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
3-oxoacyl-[acyl-carrier-protein] reductase FabG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXW2_9RHIZ rbh
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_500_bf_scaffold_5300_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7150..8139)
DNA (990bp) protein (330aa)
ABC transporter permease (EC:3.6.3.31); K11074 putrescine transport system permease protein
Putrescine ABC transporter, permease protein PotI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1C0_9RHIZ rbh
Putrescine ABC transporter, permease protein PotI {ECO:0000313|EMBL:EYR79410.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_500_bf_scaffold_5300_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8136..9068)
DNA (933bp) protein (311aa)
Spermidine/putrescine transport system permease protein PotB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5V6_9RHIZ rbh
Spermidine/putrescine transport system permease protein PotB {ECO:0000313|EMBL:EYR79411.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative spermidine/putrescine ABC transporter permease
SCNpilot_cont_500_bf_scaffold_5300_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9215..9748)
DNA (534bp) protein (178aa)
Spermidine/putrescine-binding periplasmic protein 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWZ3_9RHIZ rbh
Spermidine/putrescine-binding periplasmic protein 1 {ECO:0000313|EMBL:EYR79412.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative spermidine/putrescine ABC transporter substrate-binding protein; K11069 spermidine/putrescine transport system substrate-binding protein
Displaying 10 items

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