ggKbase home page

SCNpilot_cont_500_bf_scaffold_3230

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3230_1
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

60..1241
DNA (1182bp) protein (394aa)
NAD(FAD)-utilizing dehydrogenase n=1 Tax=Rhizobium mongolense RepID=UPI0003B44C01
Putative flavoprotein {ECO:0000313|EMBL:GAJ94948.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3230_2
unknown

Not on your lists

1431..1574
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3230_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1885..4413
DNA (2529bp) protein (843aa)
Methyl-accepting chemotaxis protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9J9C1_AGRRK
mcpZch1; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:ACM25523.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_500_bf_scaffold_3230_4
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4593..4832)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CYY0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EDQ34665.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3230_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4973..5425)
DNA (453bp) protein (151aa)
Isocitrate lyase AceA {ECO:0000313|EMBL:EYR80422.1}; EC=4.1.3.1 {ECO:0000313|EMBL:EYR80422.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aceA; isocitrate lyase (EC:4.1.3.1)
Isocitrate lyase AceA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVG9_9RHIZ
SCNpilot_cont_500_bf_scaffold_3230_6
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

5670..6254
DNA (585bp) protein (195aa)
Uncharacterized protein {ECO:0000313|EMBL:KIY12814.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
SCNpilot_cont_500_bf_scaffold_3230_7
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6464..7882
DNA (1419bp) protein (473aa)
XRE family transcriptional regulator n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q5H8_9RHIZ
XRE family transcriptional regulator {ECO:0000313|EMBL:EKF58999.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
transcriptional regulator; K07110 rbh
SCNpilot_cont_500_bf_scaffold_3230_8
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8248..9108
DNA (861bp) protein (287aa)
Putrescine-binding periplasmic protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U512_RHIRD rbh
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
potF1; putrescine/spermidine ABC transporter, substrate-binding component rbh
SCNpilot_cont_500_bf_scaffold_3230_9
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9221..10378
DNA (1158bp) protein (386aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
Spermidine/putrescine ABC transporter ATP-binding subunit n=1 Tax=Rhizobium sp. CF080 RepID=J3C4J2_9RHIZ rbh
potG1; putrescine/spermidine ABC transporter, ATP-binding component rbh
SCNpilot_cont_500_bf_scaffold_3230_10
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10389..11306
DNA (918bp) protein (306aa)
ABC-type spermidine/putrescine transport system, permease component I n=1 Tax=Rhizobium sp. CF080 RepID=J2J7K5_9RHIZ rbh
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:EUC00245.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
potB; ABC transporter membrane spanning protein; K11075 putrescine transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_3230_11
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11303..12118
DNA (816bp) protein (272aa)
Putrescine/spermidine ABC transporter, permease component n=2 Tax=Rhizobium RepID=U4PQS8_9RHIZ rbh
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:KGD86241.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
potI1; putrescine/spermidine ABC transporter, permease component rbh
SCNpilot_cont_500_bf_scaffold_3230_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12173..14191)
DNA (2019bp) protein (673aa)
Uncharacterized protein involved in outer membrane biogenesis n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0WA39_RHILT
Uncharacterized protein involved in outer membrane biogenesis {ECO:0000313|EMBL:EJC82631.1}; Flags: Precursor;; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
hypothetical protein; K07289 AsmA protein
SCNpilot_cont_500_bf_scaffold_3230_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14464..18231)
DNA (3768bp) protein (1256aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Two component sensor kinase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LFH7_RHITR
two component sensor kinase
SCNpilot_cont_500_bf_scaffold_3230_14
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18465..18908
DNA (444bp) protein (148aa)
phasin n=1 Tax=Rhizobium giardinii RepID=UPI000380056E
Phasin {ECO:0000313|EMBL:KDP71929.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3230_trna_1
unknown

Not on your lists

19041..19114
DNA (74bp)
transferRNA
Displaying 15 items

View Taxonomy