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SCNpilot_cont_500_bf_scaffold_3546

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3546_1
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..507
DNA (507bp) protein (169aa)
Spermidine/putrescine ABC transporter n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QS97_9RHIZ
Spermidine/putrescine ABC transporter {ECO:0000313|EMBL:EKF57907.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
spermidine/putrescine ABC transporter permease
SCNpilot_cont_500_bf_scaffold_3546_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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667..1164
DNA (498bp) protein (166aa)
3-oxoacyl-[acyl-carrier-protein] reductase FabG {ECO:0000313|EMBL:EYR78433.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EYR78433.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative 3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase) n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QA56_9RHIZ
short-chain dehydrogenase/reductase
SCNpilot_cont_500_bf_scaffold_3546_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1179..1946
DNA (768bp) protein (256aa)
3-oxoacyl-[acyl-carrier-protein] reductase FabG {ECO:0000313|EMBL:EYR78434.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EYR78434.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dehydrogenase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] rbh
3-oxoacyl-[acyl-carrier-protein] reductase FabG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPK6_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_3546_4
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2021..2632
DNA (612bp) protein (204aa)
ABC transporter substrate binding protein (Spermidine/putrescine) n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q2E7_9RHIZ
ABC transporter substrate binding protein (Spermidine/putrescine) {ECO:0000313|EMBL:EKF57904.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
ABC transporter substrate binding protein (spermidine/putrescine)
SCNpilot_cont_500_bf_scaffold_3546_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2623..3225
DNA (603bp) protein (201aa)
ABC transporter substrate binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS44_9RHIZ
ABC transporter substrate binding protein {ECO:0000313|EMBL:EYR78435.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spermidine/putrescine ABC transporter
SCNpilot_cont_500_bf_scaffold_3546_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3293..3889
DNA (597bp) protein (199aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000313|EMBL:EYR78436.1}; EC=3.6.3.31 {ECO:0000313|EMBL:EYR78436.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PAE2_9RHIZ
ABC transporter, ATP-binding protein
SCNpilot_cont_500_bf_scaffold_3546_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3889..4359
DNA (471bp) protein (157aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000313|EMBL:EYR78436.1}; EC=3.6.3.31 {ECO:0000313|EMBL:EYR78436.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PAE2_9RHIZ
ABC transporter
SCNpilot_cont_500_bf_scaffold_3546_8
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4400..5281
DNA (882bp) protein (294aa)
Putative xylanase/chitin deacetylase n=1 Tax=Rhizobium sp. CF142 RepID=J1T1E3_9RHIZ rbh
Putative xylanase/chitin deacetylase {ECO:0000313|EMBL:EJJ31353.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
cyclic imide hydrolase
SCNpilot_cont_500_bf_scaffold_3546_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5333..5662
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1K9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82211.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3546_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5655..6731
DNA (1077bp) protein (359aa)
Cobalamin synthesis protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EY14_9RHIZ rbh
Cobalamin synthesis protein {ECO:0000313|EMBL:EYR82210.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cobalamin synthesis protein
SCNpilot_cont_500_bf_scaffold_3546_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6731..7963
DNA (1233bp) protein (411aa)
Spermidine/putrescine ABC transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CH74_9RHIZ rbh
Spermidine/putrescine ABC transporter {ECO:0000313|EMBL:EYR82209.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spermidine/putrescine ABC transporter; K02055 putative spermidine/putrescine transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_3546_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7966..9321
DNA (1356bp) protein (452aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000313|EMBL:EYR82208.1}; EC=6.3.5.- {ECO:0000313|EMBL:EYR82208.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gatA; hypothetical protein; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] rbh
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX77_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_3546_13
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9518..10285
DNA (768bp) protein (256aa)
oxidoreductase (EC:1.-.-.-) rbh
Oxidoreductase n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0P3G7_RHIML rbh
Cyclopentanol dehydrogenase {ECO:0000313|EMBL:CDN51610.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCNpilot_cont_500_bf_scaffold_3546_14
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10296..11534
DNA (1239bp) protein (413aa)
FAD-linked oxidoreductase {ECO:0000313|EMBL:ABR59180.1}; EC=1.1.3.8 {ECO:0000313|EMBL:ABR59180.1};; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
FAD-dependent oxidoreductase n=1 Tax=Sinorhizobium medicae RepID=UPI00035CFD5D rbh
FAD-linked oxidoreductase rbh
SCNpilot_cont_500_bf_scaffold_3546_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11632..13419)
DNA (1788bp) protein (596aa)
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0KGW3_RHILT rbh
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase {ECO:0000313|EMBL:EJC76429.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
pyruvate decarboxylase rbh
SCNpilot_cont_500_bf_scaffold_3546_16
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13577..13969)
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000382CF38
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB42797.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
Displaying 16 items

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