ggKbase home page

SCNpilot_cont_500_bf_scaffold_7604

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_7604_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..2073
DNA (2073bp) protein (691aa)
ligD; ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP dependent DNA ligase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07K81_RHOP5
ATP dependent DNA ligase {ECO:0000313|EMBL:ABJ07653.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_500_bf_scaffold_7604_2
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2209..3771)
DNA (1563bp) protein (521aa)
carboxypeptidase n=1 Tax=Rhizobium leguminosarum RepID=UPI000380B39F
Serine carboxypeptidase protein {ECO:0000313|EMBL:AJC77626.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
peptidase S10 serine carboxypeptidase
SCNpilot_cont_500_bf_scaffold_7604_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4117..4488)
DNA (372bp) protein (124aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8P3H3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09980.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_7604_4
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4659..4889
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QG37_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09979.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_7604_5
unknown

Not on your lists

comp(4820..4999)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_7604_6
unknown

Not on your lists

comp(5020..5121)
DNA (102bp) protein (34aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_7604_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5228..5809)
DNA (582bp) protein (194aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
NAD(P)H dehydrogenase (quinone) n=2 Tax=Bradyrhizobiaceae RepID=F7QG34_9BRAD
wrbA; flavoprotein WrbA; K03809 Trp repressor binding protein
SCNpilot_cont_500_bf_scaffold_7604_8
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5899..6597)
DNA (699bp) protein (233aa)
Pirin-like protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P3H0_9BRAD
Pirin-like protein {ECO:0000313|EMBL:EKS35249.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
pirin family protein; K06911
SCNpilot_cont_500_bf_scaffold_7604_9
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6706..7527
DNA (822bp) protein (274aa)
Transcriptional regulator, LysR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V379_9BRAD
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EFI52409.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_cont_500_bf_scaffold_7604_10
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7995..8711
DNA (717bp) protein (239aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00219};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440};; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
dihydroorotase (EC:3.5.2.3); K01465 dihydroorotase [EC:3.5.2.3]
Dihydroorotase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CMA7_9RHIZ
SCNpilot_cont_500_bf_scaffold_7604_11
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8897..11191
DNA (2295bp) protein (765aa)
Malic enzyme {ECO:0000313|EMBL:KKB13138.1}; EC=1.1.1.40 {ECO:0000313|EMBL:KKB13138.1};; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
NADP-dependent malic enzyme; K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
NADP-dependent malic enzyme n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB98_PELHB
SCNpilot_cont_500_bf_scaffold_7604_12
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11426..11737)
DNA (312bp) protein (104aa)
3-isopropylmalate dehydratase small subunit; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DFF8_BRAJP
Displaying 12 items

View Taxonomy