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SCNpilot_cont_500_bf_scaffold_1333

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1333_1
Saccharibacter sp. AM169, Saccharibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..127
DNA (126bp) protein (42aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1343158 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Saccharibacter.;" source="Saccharibacter sp. AM169.;"
DNA primase; K02316 DNA primase [EC:2.7.7.-]
DNA primase n=1 Tax=Gallaecimonas xiamenensis 3-C-1 RepID=K2J5U2_9GAMM
SCNpilot_cont_500_bf_scaffold_1333_2
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

137..1297
DNA (1161bp) protein (387aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
DNA primase (EC:2.7.7.-); K02316 DNA primase [EC:2.7.7.-]
DNA primase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPR9_GRABC
SCNpilot_cont_500_bf_scaffold_1333_3
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1362..3233
DNA (1872bp) protein (624aa)
RNA polymerase sigma factor RpoD n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPS0_GRABC rbh
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor rbh
SCNpilot_cont_500_bf_scaffold_1333_4
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3652..4209
DNA (558bp) protein (186aa)
Acetyltransferase, GNAT family n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZXM6_9PROT
Acetyl transferase {ECO:0000313|EMBL:GAN78414.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_500_bf_scaffold_1333_5
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4302..4634)
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002F7D8CF
ybaK; YbaK protein
YbaK protein {ECO:0000313|EMBL:BAF88727.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_1333_6
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4652..5800
DNA (1149bp) protein (383aa)
coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] rbh
UPI0003D360F5 related cluster n=1 Tax=unknown RepID=UPI0003D360F5 rbh
Coproporphyrinogen III oxidase HemN {ECO:0000313|EMBL:GAJ27665.1}; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
SCNpilot_cont_500_bf_scaffold_1333_7
unknown

Not on your lists

comp(5858..7033)
DNA (1176bp) protein (392aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1333_8
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7103..7963)
DNA (861bp) protein (287aa)
uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] rbh
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZJP5_GLUDA rbh
SCNpilot_cont_500_bf_scaffold_1333_9
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7981..9228
DNA (1248bp) protein (416aa)
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPJ1_GRABC rbh
Leucine-, isoleucine-, valine-, (Threonine-, and alanine-) binding protein {ECO:0000313|EMBL:AHJ64274.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein rbh
SCNpilot_cont_500_bf_scaffold_1333_10
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9268..10269)
DNA (1002bp) protein (334aa)
fructokinase (EC:2.7.1.4); K00847 fructokinase [EC:2.7.1.4] rbh
Kinase, PfkB family n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A405_9PROT rbh
Sugar kinase PfkB {ECO:0000313|EMBL:GAN78372.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
SCNpilot_cont_500_bf_scaffold_1333_11
unknown

Not on your lists

10397..10774
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1333_12
Aquitalea magnusonii, Aquitalea, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10825..11961
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FD510B rbh
Iron siderophore ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJV24686.1}; TaxID=332411 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Aquitalea.;" source="Aquitalea magnusonii.;"
ABC transporter substrate binding protein (iron) rbh
SCNpilot_cont_500_bf_scaffold_1333_13
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11958..12986
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003105127
Iron chelate uptake ABC transporter, FeCT family, permease protein {ECO:0000313|EMBL:EFH09781.1}; Flags: Fragment;; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
ABC transporter permease; K02015 iron complex transport system permease protein
SCNpilot_cont_500_bf_scaffold_1333_14
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12983..13750
DNA (768bp) protein (256aa)
ABC transporter; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D7FC04
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFH09782.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
SCNpilot_cont_500_bf_scaffold_1333_15
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13795..14400)
DNA (606bp) protein (202aa)
Isochorismatase hydrolase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UGZ5_METS4
Cysteine hydrolase {ECO:0000313|EMBL:KGM35751.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
isochorismatase hydrolase
SCNpilot_cont_500_bf_scaffold_1333_16
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14400..14630)
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYF7_9SPHN
DNA, contig: SP607 {ECO:0000313|EMBL:GAN12245.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1333_17
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14735..16003)
DNA (1269bp) protein (423aa)
HlyD family secretion protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JC04_9PROT
HlyD family secretion protein {ECO:0000313|EMBL:EKE68129.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
putative secretion protein (HlyD family); putative Proteases secretion protein
SCNpilot_cont_500_bf_scaffold_1333_18
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16000..17694)
DNA (1695bp) protein (565aa)
type I secretion protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037A44D8
Peptidase {ECO:0000313|EMBL:KJB93922.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
type I secretion system ATPase; K06148 ATP-binding cassette, subfamily C, bacterial
SCNpilot_cont_500_bf_scaffold_1333_19
Haemophilus influenzae, Haemophilus, Pasteurellales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17708..21139)
DNA (3432bp) protein (1144aa)
Putative trimeric autotransporter adhesin n=4 Tax=Haemophilus influenzae RepID=E7A427_HAEIF
baaA1; trimeric autotransporter adhesin
Putative trimeric autotransporter adhesin {ECO:0000313|EMBL:CBY80800.1}; TaxID=866630 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus.;" source="Haemophilus influenzae F3031.;"
SCNpilot_cont_500_bf_scaffold_1333_20
Streptococcus gordonii, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(21102..33284)
DNA (12183bp) protein (4061aa)
PREDICTED: mucin-2-like n=1 Tax=Myotis brandtii RepID=UPI0003BBCFB9
General secretion pathway protein GspB {ECO:0000313|EMBL:KKB95025.1}; TaxID=1302 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus gordonii.;"
cell wall surface anchor family protein
SCNpilot_cont_500_bf_scaffold_1333_21
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33530..35347
DNA (1818bp) protein (606aa)
Transporter n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BRM6_GRABC rbh
ABC transporter multidrug resistance {ECO:0000313|EMBL:GAN76442.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
transporter rbh
SCNpilot_cont_500_bf_scaffold_1333_22
Acidocella sp. MX-AZ02, Acidocella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35352..36800)
DNA (1449bp) protein (483aa)
L-asparagine permease n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5ZMR2_9PROT rbh
L-asparagine permease {ECO:0000313|EMBL:EKN00586.1}; TaxID=1214225 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidocella.;" source="Acidocella sp. MX-AZ02.;"
amino acid permease; K11738 L-asparagine permease rbh
SCNpilot_cont_500_bf_scaffold_1333_23
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36935..38002
DNA (1068bp) protein (356aa)
Mlr9221 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q981V4_RHILO rbh
hypothetical protein; K07045 rbh
Mlr9221 protein {ECO:0000313|EMBL:BAB54605.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_500_bf_scaffold_1333_24
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38034..39146
DNA (1113bp) protein (371aa)
Mlr9222 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q981V3_RHILO rbh
hypothetical protein; K07045 rbh
Mlr9222 protein {ECO:0000313|EMBL:BAB54606.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_500_bf_scaffold_1333_25
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39151..39564
DNA (414bp) protein (138aa)
Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase n=1 Tax=Rhizobium sp. CF080 RepID=J2RW65_9RHIZ
Rieske (2Fe-2S) iron-sulfur domain-containing protein {ECO:0000313|EMBL:EUB96430.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
ferredoxin; K05710 dioxygenase ferredoxin subunit
SCNpilot_cont_500_bf_scaffold_1333_26
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39790..40182
DNA (393bp) protein (131aa)
4-carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
4-carboxymuconolactone decarboxylase n=1 Tax=Advenella kashmirensis W13003 RepID=V8QSC4_9BURK
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:ETF02220.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
SCNpilot_cont_500_bf_scaffold_1333_27
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40186..41556)
DNA (1371bp) protein (457aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
phosphate regulon sensor protein phoR (EC:2.7.3.-); K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] rbh
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZZN6_9PROT
SCNpilot_cont_500_bf_scaffold_1333_28
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41581..42012)
DNA (432bp) protein (144aa)
Hypothetical cytosolic protein n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BQ28_GRABC
Uncharacterized protein {ECO:0000313|EMBL:GAN77719.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
putative cytoplasmic protein
SCNpilot_cont_500_bf_scaffold_1333_29
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42042..43997)
DNA (1956bp) protein (652aa)
ATP-dependent helicase DinG; K03722 ATP-dependent DNA helicase DinG [EC:3.6.4.12] rbh
ATP-dependent helicase, DinG family n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BQ29_GRABC rbh
ATP-dependent helicase, DinG family {ECO:0000313|EMBL:ABI63073.1}; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
SCNpilot_cont_500_bf_scaffold_1333_30
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44047..44823)
DNA (777bp) protein (259aa)
ATP-dependent helicase DinG; K03722 ATP-dependent DNA helicase DinG [EC:3.6.4.12]
ATP-dependent helicase, DinG family n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BQ29_GRABC
ATP-dependent helicase, DinG family protein {ECO:0000313|EMBL:AHJ64074.1}; TaxID=1052004 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis CGDNIH3.;"
Displaying items 1-30 of 41 in total

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