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SCNpilot_cont_500_bf_scaffold_244

Search features with annotation key words

Displaying items 1-30 of 197 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_244_trna_1
unknown

Not on your lists

370..442
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_244_1
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(613..1158)
DNA (546bp) protein (182aa)
Cytochrome B561 n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZFT8_9BRAD
cytochrome B561
Cytochrome B561 {ECO:0000313|EMBL:BAM92668.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_500_bf_scaffold_244_2
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1217..1942)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2ID73_BEII9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB96838.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_500_bf_scaffold_244_3
unknown

Not on your lists

comp(2115..2525)
DNA (411bp) protein (137aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_244_4
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2763..4163)
DNA (1401bp) protein (467aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
glucuronate isomerase (EC:5.3.1.12) rbh
Uronate isomerase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HMP2_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_244_5
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4429..4914)
DNA (486bp) protein (162aa)
Ferroxidase {ECO:0000256|PIRNR:PIRNR002560}; EC=1.16.3.1 {ECO:0000256|PIRNR:PIRNR002560};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Bacterioferritin n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKE1_9RHIZ
bacterioferritin
SCNpilot_cont_500_bf_scaffold_244_6
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4880..5191)
DNA (312bp) protein (104aa)
Msr5525 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98BL1_RHILO
Uncharacterized protein {ECO:0000313|EMBL:CDX16885.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_244_7
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5202..6311)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9ESZ8_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:CDO60293.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_244_8
unknown

Not on your lists

comp(6345..6524)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_244_9
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6533..7039)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Phyllobacterium sp. YR531 RepID=J3C8G6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJN00594.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_244_10
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7328..8413)
DNA (1086bp) protein (362aa)
Probable lactose transport ATP-binding protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D0L0_9RHIZ
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGF68252.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
lactose transport ATP-binding protein LacK-like
SCNpilot_cont_500_bf_scaffold_244_11
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8481..9266)
DNA (786bp) protein (262aa)
Putative IclR family transcriptional regulator n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D0K8_9RHIZ rbh
IclR family transcriptional regulator {ECO:0000313|EMBL:KGF68251.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
transcriptional regulator IclR
SCNpilot_cont_500_bf_scaffold_244_12
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9454..10689
DNA (1236bp) protein (412aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Rhizobium sp. AP16 RepID=J2WE50_9RHIZ
sugar ABC transporter; K02027 multiple sugar transport system substrate-binding protein
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:EJK81088.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_cont_500_bf_scaffold_244_13
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10758..11708
DNA (951bp) protein (317aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhodobacter sp. SW2 RepID=C8RWU0_9RHOB rbh
ABC transporter permease {ECO:0000313|EMBL:KJS16991.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
sugar ABC transporter permease; K02025 multiple sugar transport system permease protein
SCNpilot_cont_500_bf_scaffold_244_14
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11710..12069
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Ruegeria conchae RepID=UPI000237A304
Uncharacterized protein {ECO:0000313|EMBL:EYD77655.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_244_15
Thioclava dalianensis, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12077..12925
DNA (849bp) protein (283aa)
sugar ABC transporter permease n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003634A11 rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:KEP70578.1}; TaxID=1185766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava dalianensis.;"
sugar ABC transporter permease; K02026 multiple sugar transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_244_16
Loktanella hongkongensis, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12928..15081
DNA (2154bp) protein (718aa)
Alpha-galactosidase {ECO:0000313|EMBL:EYD70471.1}; EC=3.2.1.22 {ECO:0000313|EMBL:EYD70471.1};; TaxID=1122180 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella hongkongensis DSM 17492.;"
glycoside hydrolase, clan GH-D; K07407 alpha-galactosidase [EC:3.2.1.22] rbh
hypothetical protein n=1 Tax=Loktanella hongkongensis RepID=UPI000370A21A rbh
SCNpilot_cont_500_bf_scaffold_244_17
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15164..16084
DNA (921bp) protein (307aa)
dgoK; 2-dehydro-3-deoxygalactonokinase; K00883 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58]
2-dehydro-3-deoxygalactonokinase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A1A2_RHIFH
2-dehydro-3-deoxygalactonokinase {ECO:0000313|EMBL:AHK43563.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_cont_500_bf_scaffold_244_18
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16093..16734
DNA (642bp) protein (214aa)
kdgA; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; K01631 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21]
Putative KHG-KDPG bifunctional aldolase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V553_9RHIZ
Putative KHG-KDPG bifunctional aldolase {ECO:0000313|EMBL:ENN88975.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_cont_500_bf_scaffold_244_19
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16766..18718
DNA (1953bp) protein (651aa)
Beta-galactosidase {ECO:0000256|PIRNR:PIRNR001084}; Short=Beta-gal {ECO:0000256|PIRNR:PIRNR001084};; EC=3.2.1.23 {ECO:0000256|PIRNR:PIRNR001084};; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
beta-galactosidase; K12308 beta-galactosidase [EC:3.2.1.23]
Beta-galactosidase n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D0J2_9RHIZ
SCNpilot_cont_500_bf_scaffold_244_20
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18747..21209
DNA (2463bp) protein (821aa)
DEAD/DEAH box helicase; K03579 ATP-dependent helicase HrpB [EC:3.6.4.13]
ATP-dependent helicase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037E1BA6
ATP-dependent helicase {ECO:0000313|EMBL:EXL09148.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
SCNpilot_cont_500_bf_scaffold_244_21
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21259..22575
DNA (1317bp) protein (439aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
two-component, sensor histidine protein kinase; K15011 two-component system, sensor histidine kinase RegB [EC:2.7.13.3]
ATPase n=1 Tax=Rhizobium loti RepID=UPI000367C9DD
SCNpilot_cont_500_bf_scaffold_244_22
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22637..23212
DNA (576bp) protein (192aa)
chemotaxis protein CheY n=1 Tax=Hoeflea sp. 108 RepID=UPI000381EF89
Two-component, response regulator {ECO:0000313|EMBL:EKF20138.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
response regulator receiver; K15012 two-component system, response regulator RegA
SCNpilot_cont_500_bf_scaffold_244_23
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23215..23577)
DNA (363bp) protein (121aa)
UPI0003CE61F9 related cluster n=1 Tax=unknown RepID=UPI0003CE61F9
putative transcriptional regulator
XRE family transcriptional regulator {ECO:0000313|EMBL:ESY62698.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
SCNpilot_cont_500_bf_scaffold_244_24
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23574..24125)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BWN8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM73990.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
Smr protein/MutS2
SCNpilot_cont_500_bf_scaffold_244_25
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24122..25228)
DNA (1107bp) protein (369aa)
MltA domain-containing protein; K08304 membrane-bound lytic murein transglycosylase A [EC:3.2.1.-]
MltA domain-containing protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YHU3_9RHIZ
MltA domain-containing protein {ECO:0000313|EMBL:EHH07180.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
SCNpilot_cont_500_bf_scaffold_244_26
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25266..26024)
DNA (759bp) protein (253aa)
calcium-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037A5926
Import inner membrane translocase subunit Tim44 {ECO:0000313|EMBL:EHK58615.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_244_27
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26139..26618
DNA (480bp) protein (160aa)
FxsA cytoplasmic membrane protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YA19_MESOW
FxsA cytoplasmic membrane protein; K07113 UPF0716 protein FxsA
FxsA cytoplasmic membrane protein {ECO:0000313|EMBL:AEH85356.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_500_bf_scaffold_244_28
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26718..27242
DNA (525bp) protein (175aa)
Protein-export protein SecB n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKX3_9RHIZ
Protein-export protein SecB {ECO:0000256|HAMAP-Rule:MF_00821}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
protein-export protein SecB; K03071 preprotein translocase subunit SecB
SCNpilot_cont_500_bf_scaffold_244_29
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27264..27965)
DNA (702bp) protein (234aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7); K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7]
DNA polymerase III, epsilon subunit n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HMK3_9RHIZ
DNA polymerase III, epsilon subunit {ECO:0000313|EMBL:EJM99897.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
Displaying items 1-30 of 197 in total

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