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SCNpilot_cont_500_bf_scaffold_244

Search features with annotation key words

Displaying items 31-60 of 197 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_244_30
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28019..28633)
DNA (615bp) protein (205aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24]
Dephospho-CoA kinase n=1 Tax=Nitratireductor indicus C115 RepID=K2N2U8_9RHIZ
SCNpilot_cont_500_bf_scaffold_244_31
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28630..29475)
DNA (846bp) protein (282aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|SAAS:SAAS00228653}; EC=1.1.1.- {ECO:0000256|SAAS:SAAS00275099};; EC=1.1.1.25 {ECO:0000256|SAAS:SAAS00216361};; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
Shikimate 5-dehydrogenase n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BWP7_9RHIZ rbh
shikimate 5-dehydrogenase
SCNpilot_cont_500_bf_scaffold_244_32
Brucella inopinata, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29468..30067)
DNA (600bp) protein (200aa)
Maf-like protein maf n=2 Tax=Brucella RepID=E0DJG5_9RHIZ
Maf-like protein maf {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=470735 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella inopinata BO1.;"
Maf-like protein; K06287 septum formation protein
SCNpilot_cont_500_bf_scaffold_244_33
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30100..30921)
DNA (822bp) protein (274aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
UPI0003D04004 related cluster n=1 Tax=unknown RepID=UPI0003D04004 rbh
hypothetical protein; K09773 hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_244_34
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31388..32350
DNA (963bp) protein (321aa)
hemE; uroporphyrinogen decarboxylase; K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37]
Uroporphyrinogen decarboxylase {ECO:0000255|HAMAP-Rule:MF_00218}; Short=UPD {ECO:0000255|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000255|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000255|HAMAP-Rule:MF_00218};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Uroporphyrinogen decarboxylase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=DCUP_MESSB
SCNpilot_cont_500_bf_scaffold_244_35
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32350..32775
DNA (426bp) protein (142aa)
TIGR00701 family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ04_9RHIZ
TIGR00701 family protein {ECO:0000313|EMBL:EIM29196.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein; K08973 putative membrane protein
SCNpilot_cont_500_bf_scaffold_244_36
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32921..34186
DNA (1266bp) protein (422aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
transcription termination factor Rho n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D8F3AB
rho; transcription termination factor Rho; K03628 transcription termination factor Rho rbh
SCNpilot_cont_500_bf_scaffold_244_37
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34197..36218)
DNA (2022bp) protein (674aa)
UPI0003CFEA63 related cluster n=1 Tax=unknown RepID=UPI0003CFEA63 rbh
Uncharacterized protein {ECO:0000313|EMBL:CDX62971.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
thioredoxin domain protein rbh
SCNpilot_cont_500_bf_scaffold_244_38
Mesorhizobium sp. LNJC372A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36281..37594
DNA (1314bp) protein (438aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1287256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC372A00.;"
small GTP-binding protein; K03650 tRNA modification GTPase [EC:3.6.-.-]
UPI0003CE491F related cluster n=1 Tax=unknown RepID=UPI0003CE491F
SCNpilot_cont_500_bf_scaffold_244_39
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37717..39609
DNA (1893bp) protein (631aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKY3_9RHIZ
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme
SCNpilot_cont_500_bf_scaffold_244_40
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39606..40232
DNA (627bp) protein (209aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.170 {ECO:0000256|HAMAP-Rule:MF_00074};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
gidB; 16S rRNA methyltransferase GidB; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2ME38_9RHIZ
SCNpilot_cont_500_bf_scaffold_244_41
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40272..41069
DNA (798bp) protein (266aa)
UPI0003CF66FA related cluster n=1 Tax=unknown RepID=UPI0003CF66FA
Chromosome partitioning protein ParA {ECO:0000313|EMBL:ESY76770.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
Cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein
SCNpilot_cont_500_bf_scaffold_244_42
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41094..41966
DNA (873bp) protein (291aa)
chromosome partitioning protein ParB n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002D63692
ParB-like partition protein {ECO:0000313|EMBL:EHK58630.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ParB-like partition protein
SCNpilot_cont_500_bf_scaffold_244_43
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41995..43035)
DNA (1041bp) protein (347aa)
DNA polymerase III subunit delta n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003198FDE
DNA polymerase III, delta subunit {ECO:0000313|EMBL:CCV10412.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
DNA polymerase III, delta subunit
SCNpilot_cont_500_bf_scaffold_244_44
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43043..43333)
DNA (291bp) protein (97aa)
membrane protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003638970
hypothetical protein; K02221 YggT family protein
Uncharacterized protein {ECO:0000313|EMBL:AID33191.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
SCNpilot_cont_500_bf_scaffold_244_45
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43449..44249)
DNA (801bp) protein (267aa)
naphthoate synthase; K07536 2-ketocyclohexanecarboxyl-CoA hydrolase [EC:3.1.2.-] rbh
1,4-dihydroxy-2-naphthoyl-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934}; Short=DHNA-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934};; EC=4.1.3.36 {ECO:0000256|HAMAP-Rule:MF_01934};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Naphthoate synthase n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IDS0_XANP2 rbh
SCNpilot_cont_500_bf_scaffold_244_46
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44287..45054)
DNA (768bp) protein (256aa)
NAD-dependent epimerase/dehydratase; K07535 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase [EC:1.1.1.-]
Acetoacetyl-CoA reductase n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QVQ1_RALPI
Acetoacetyl-CoA reductase {ECO:0000313|EMBL:AGW94303.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
SCNpilot_cont_500_bf_scaffold_244_47
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45147..45635
DNA (489bp) protein (163aa)
Benzoate anaerobic degradation transcriptional regulator BadR, MarR family n=1 Tax=Rhodovulum sp. PH10 RepID=J6UD71_9RHOB
Transcriptional regulator {ECO:0000313|EMBL:GAN77703.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
MarR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_244_48
uncultured Rhizobiales bacterium HF4000_48A13, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45630..47264)
DNA (1635bp) protein (545aa)
cyclohexanecarboxylate-CoA ligase; K04116 cyclohexanecarboxylate-CoA ligase [EC:6.2.1.-]
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II n=1 Tax=uncultured Rhizobiales bacterium HF4000_48A13 RepID=E0XZ45_9RHIZ
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II {ECO:0000313|EMBL:ADI19686.1}; TaxID=710781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; environmental samples.;" source="uncultured Rhizobiales bacterium HF4000_48A13.;"
SCNpilot_cont_500_bf_scaffold_244_49

Not on your lists

comp(47304..48476)
DNA (1173bp) protein (391aa)
acyl-CoA dehydrogenase n=1 Tax=Marinobacterium rhizophilum RepID=UPI00037B8305
Uncharacterized protein {ECO:0000313|EMBL:KKO04229.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
badJ; cyclohexanecarboxyl-CoA dehydrogenase
SCNpilot_cont_500_bf_scaffold_244_50
unknown

Not on your lists

comp(48473..48568)
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_244_51
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48766..49383)
DNA (618bp) protein (206aa)
UPI0003CE1B71 related cluster n=1 Tax=unknown RepID=UPI0003CE1B71
Photosystem reaction center subunit H {ECO:0000313|EMBL:ESY90600.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_244_52
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49574..50494
DNA (921bp) protein (307aa)
Diacylglycerol kinase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HME0_9RHIZ
Diacylglycerol kinase {ECO:0000313|EMBL:EHK58070.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
multidrug resistance protein BmrU; K07029
SCNpilot_cont_500_bf_scaffold_244_53
unknown

Not on your lists

comp(50491..50661)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_244_54
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50799..51263)
DNA (465bp) protein (155aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HMD8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX36990.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_244_55
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51271..51609)
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HMD7_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58067.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_244_56
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51723..52817
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M9J9_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EKF18811.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_244_57
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52880..53635)
DNA (756bp) protein (252aa)
cAMP-binding protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KIP7_MESAW
cAMP-binding protein
cAMP-binding protein {ECO:0000313|EMBL:AGB43938.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_cont_500_bf_scaffold_244_58
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53717..54193
DNA (477bp) protein (159aa)
Response regulator receiver protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y0L9_MESOW
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:AEH85938.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_500_bf_scaffold_244_59
Mesorhizobium sp. LSHC426A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(54166..54714)
DNA (549bp) protein (183aa)
RNA polymerase sigma factor n=1 Tax=Hoeflea sp. 108 RepID=UPI00036F723A
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1287298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC426A00.;"
RNA polymerase sigma factor, sigma-70 family
Displaying items 31-60 of 197 in total

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