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SCNpilot_cont_500_bf_scaffold_287

Search features with annotation key words

Displaying items 91-120 of 200 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_287_91
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

88872..89243
DNA (372bp) protein (124aa)
Flagellar export protein FliJ n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FLA2_9RHIZ
Flagellar export protein FliJ {ECO:0000313|EMBL:ESX78730.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_287_92
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(89403..89678)
DNA (276bp) protein (92aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000380BABD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESY96182.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
SCNpilot_cont_500_bf_scaffold_287_93
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

89937..91121
DNA (1185bp) protein (395aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-]
UPI0003CFBE87 related cluster n=1 Tax=unknown RepID=UPI0003CFBE87
SCNpilot_cont_500_bf_scaffold_287_94
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91287..91577)
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003789C64
Uncharacterized protein {ECO:0000313|EMBL:KJX90446.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_287_95
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(91722..92711)
DNA (990bp) protein (330aa)
Oxidoreductase n=2 Tax=Mesorhizobium RepID=V7H7Y1_9RHIZ
Oxidoreductase {ECO:0000313|EMBL:ESY38404.1}; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
oxidoreductase
SCNpilot_cont_500_bf_scaffold_287_trna_1
unknown

Not on your lists

93037..93109
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_287_96
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(93269..94096)
DNA (828bp) protein (276aa)
ABC transporter n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M8W5_9RHIZ rbh
ABC transporter {ECO:0000313|EMBL:EKF17470.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_287_97
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(94118..94948)
DNA (831bp) protein (277aa)
ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI00036CC3C6 rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EKF17471.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_287_98
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(94956..95948)
DNA (993bp) protein (331aa)
myristoyl transferase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003627043 rbh
NMT1/THI5 like domain protein {ECO:0000313|EMBL:EKF17472.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
NMT1/THI5 like domain protein
SCNpilot_cont_500_bf_scaffold_287_99
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(96194..97186)
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035DE501 rbh
Cobalamin synthesis protein P47K {ECO:0000313|EMBL:EYR81106.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cobalamin synthesis protein P47K rbh
SCNpilot_cont_500_bf_scaffold_287_100
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(97189..97656)
DNA (468bp) protein (156aa)
endoribonuclease L-PSP n=1 Tax=Hoeflea sp. 108 RepID=UPI00036DAC0C
Endoribonuclease L-PSP {ECO:0000313|EMBL:EKF17474.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
Endoribonuclease L-PSP
SCNpilot_cont_500_bf_scaffold_287_101
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(97667..98401)
DNA (735bp) protein (245aa)
GntR family transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI000360DAA9 rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:EYR81104.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_287_102
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(98556..99545)
DNA (990bp) protein (330aa)
isochorismatase hydrolase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003778E5F rbh
Isochorismatase hydrolase {ECO:0000313|EMBL:EYR81102.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
isochorismatase hydrolase
SCNpilot_cont_500_bf_scaffold_287_103
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(99545..99742)
DNA (198bp) protein (66aa)
4-oxalocrotonate tautomerase family enzyme; K01821 4-oxalocrotonate tautomerase [EC:5.3.2.-]
4-oxalocrotonate tautomerase family enzyme n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYJ1_9RHIZ
4-oxalocrotonate tautomerase family enzyme {ECO:0000313|EMBL:EYR81101.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_cont_500_bf_scaffold_287_104
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(99744..100427)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CIF5_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR81100.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_287_105
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(100424..101770)
DNA (1347bp) protein (449aa)
amidohydrolase; K01464 dihydropyrimidinase [EC:3.5.2.2] rbh
Amidohydrolase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M8X4_9RHIZ rbh
Amidohydrolase {ECO:0000313|EMBL:EKF17480.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_cont_500_bf_scaffold_287_106
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(101767..102657)
DNA (891bp) protein (297aa)
serine carboxypeptidase n=1 Tax=Hoeflea sp. 108 RepID=UPI000375D327 rbh
Shikimate/quinate 5-dehydrogenase {ECO:0000313|EMBL:EYR81098.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Shikimate/quinate 5-dehydrogenase; K06410 dipicolinate synthase subunit A
SCNpilot_cont_500_bf_scaffold_287_107
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(102654..103742)
DNA (1089bp) protein (363aa)
Opine dehydrogenase Odh {ECO:0000313|EMBL:EYR81097.1}; EC=1.5.1.28 {ECO:0000313|EMBL:EYR81097.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Opine dehydrogenase Odh n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7A6_9RHIZ rbh
NAD/NADP octopine/nopaline dehydrogenase
SCNpilot_cont_500_bf_scaffold_287_108
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(103813..105252)
DNA (1440bp) protein (480aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase {ECO:0000313|EMBL:EYR81096.1}; EC=3.5.4.28 {ECO:0000313|EMBL:EYR81096.1};; EC=3.5.4.31 {ECO:0000313|EMBL:EYR81096.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
amidohydrolase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036A8F24 rbh
amidohydrolase rbh
SCNpilot_cont_500_bf_scaffold_287_109
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(105335..106507)
DNA (1173bp) protein (391aa)
Xaa-Pro dipeptidase PepQ {ECO:0000313|EMBL:EYR81095.1}; EC=3.4.13.9 {ECO:0000313|EMBL:EYR81095.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Xaa-Pro dipeptidase PepQ n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CIG0_9RHIZ rbh
peptidase M24
SCNpilot_cont_500_bf_scaffold_287_110
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(106538..107698)
DNA (1161bp) protein (387aa)
Muconate cycloisomerase 1 {ECO:0000313|EMBL:EYR81094.1}; EC=5.5.1.1 {ECO:0000313|EMBL:EYR81094.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Mandelate racemase/muconate lactonizing protein; K01856 muconate cycloisomerase [EC:5.5.1.1]
Muconate cycloisomerase 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYW9_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_287_111
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

107857..108165
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000361538A
Uncharacterized protein {ECO:0000313|EMBL:EKF17486.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_287_112
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(108206..108703)
DNA (498bp) protein (166aa)
Metallophosphoesterase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YAN8_MESOW
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:AEH88798.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_500_bf_scaffold_287_113
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

108892..109644
DNA (753bp) protein (251aa)
twin-arginine translocation pathway signal; K06152 gluconate 2-dehydrogenase gamma chain [EC:1.1.99.3]
Gluconate 2-dehydrogenase , membrane-bound, gamma subunit n=1 Tax=Rhodovulum sp. PH10 RepID=J6LLY7_9RHOB
Gluconate 2-dehydrogenase , membrane-bound, gamma subunit {ECO:0000313|EMBL:EJW13663.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
SCNpilot_cont_500_bf_scaffold_287_114
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

109674..111434
DNA (1761bp) protein (587aa)
gluconate dehydrogenase; K06151 gluconate 2-dehydrogenase alpha chain [EC:1.1.99.3] rbh
Gluconate 2-dehydrogenase , membrane-bound, flavoprotein n=1 Tax=Rhodovulum sp. PH10 RepID=J5PVV1_9RHOB rbh
Gluconate 2-dehydrogenase , membrane-bound, flavoprotein {ECO:0000313|EMBL:EJW13662.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
SCNpilot_cont_500_bf_scaffold_287_115
unknown

Not on your lists

111465..111635
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_287_116
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

111632..112858
DNA (1227bp) protein (409aa)
Gluconate 2-dehydrogenase (Acceptor) {ECO:0000313|EMBL:KFB11256.1}; EC=1.1.99.3 {ECO:0000313|EMBL:KFB11256.1};; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
Putative diheme cytochrome c-553 n=1 Tax=Rhodovulum sp. PH10 RepID=J6UHY4_9RHOB
gluconate 2-dehydrogenase
SCNpilot_cont_500_bf_scaffold_287_117
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(113040..114797)
DNA (1758bp) protein (586aa)
pyruvate oxidase (EC:1.2.3.3); K00158 pyruvate oxidase [EC:1.2.3.3] rbh
hypothetical protein n=1 Tax=Anabaena sp. PCC 7108 RepID=UPI00034DF79D rbh
Pyruvate oxidase {ECO:0000313|EMBL:KGM35755.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_cont_500_bf_scaffold_287_118
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

115022..115465
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T8W4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ETR75807.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein; K06934
SCNpilot_cont_500_bf_scaffold_287_119
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

115579..116649
DNA (1071bp) protein (357aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11C22_MESSB rbh
short chain dehydrogenase rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABG65053.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Displaying items 91-120 of 200 in total

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