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SCNpilot_cont_500_bf_scaffold_4190_curated

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4190_curated_1
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1611)
DNA (1611bp) protein (537aa)
Cation-transporting ATPase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B3N0_9RHIZ
Cation-transporting ATPase
Cation-transporting ATPase {ECO:0000313|EMBL:AGK56812.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_500_bf_scaffold_4190_curated_trna_2
unknown

Not on your lists

comp(2201..2296)
DNA (96bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_4190_curated_trna_1
unknown

Not on your lists

2489..2560
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_4190_curated_2
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2637..4391)
DNA (1755bp) protein (585aa)
UPI0003CFF7B6 related cluster n=1 Tax=unknown RepID=UPI0003CFF7B6
Uncharacterized protein {ECO:0000313|EMBL:ESZ12451.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4190_curated_3
unknown

Not on your lists

4653..4943
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4190_curated_4
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5067..6236
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037B5A08
Uncharacterized protein {ECO:0000313|EMBL:EKZ95701.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4190_curated_5
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6313..6702
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002FB111D
Uncharacterized protein {ECO:0000313|EMBL:KGT79196.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
lactoylglutathione lyase family protein
SCNpilot_cont_500_bf_scaffold_4190_curated_6
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7112..7762
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035E1C1B
Putative gamma-carboxymuconolactone decarboxylase subunit {ECO:0000313|EMBL:EKZ95703.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
carboxymuconolactone decarboxylase
SCNpilot_cont_500_bf_scaffold_4190_curated_7
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

7843..8253
DNA (411bp) protein (137aa)
Uncharacterized protein n=2 Tax=Thauera RepID=C4ZNQ7_THASP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIY14620.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
SCNpilot_cont_500_bf_scaffold_4190_curated_8
Mycobacterium rufum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8250..8651
DNA (402bp) protein (134aa)
Putative uncharacterized protein n=1 Tax=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) RepID=A1TE03_MYCVP
Uncharacterized protein {ECO:0000313|EMBL:KGI69488.1}; TaxID=318424 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium rufum.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4190_curated_9
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8697..9224
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ILS8_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS68971.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_500_bf_scaffold_4190_curated_10
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9439..10197)
DNA (759bp) protein (253aa)
Ammonium transporter n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1Z8R6_METPB
ammonium transporter; K03320 ammonium transporter, Amt family
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; Flags: Precursor;; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
SCNpilot_cont_500_bf_scaffold_4190_curated_11
Burkholderia sp. SJ98, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10228..11547)
DNA (1320bp) protein (440aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037DC00E
YidE/YbjL duplication {ECO:0000313|EMBL:EKS66952.1}; TaxID=406819 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. SJ98.;"
YidE/YbjL duplication; K07085 putative transport protein
SCNpilot_cont_500_bf_scaffold_4190_curated_12
Gordonia sp. no. 9, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11582..13513)
DNA (1932bp) protein (644aa)
Putative membrane protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KZZ8_BORA1
Uncharacterized protein {ECO:0000313|EMBL:KJR08099.1}; TaxID=1617449 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia sp. no. 9.;"
membrane protein
SCNpilot_cont_500_bf_scaffold_4190_curated_13
Streptomyces zinciresistens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13837..14766
DNA (930bp) protein (310aa)
LysR family transcriptional regulator n=1 Tax=Streptomyces sp. HmicA12 RepID=UPI00035F62C6
LysR family transcriptional regulator {ECO:0000313|EMBL:EGX59384.1}; TaxID=700597 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces zinciresistens K42.;"
LysR-family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_4190_curated_14
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14802..16556
DNA (1755bp) protein (585aa)
Porin n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A0M6_STAND
porin
Porin {ECO:0000313|EMBL:ADH91347.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_cont_500_bf_scaffold_4190_curated_15
unknown

Not on your lists

16694..17371
DNA (678bp) protein (226aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4190_curated_16
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17269..17982)
DNA (714bp) protein (238aa)
ABC-type cobalt transport system permease component CbiQ and related transporter-like protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J364_POLGS
cbiQ; cobalt ABC transporter permease; K02008 cobalt/nickel transport system permease protein
ABC-type cobalt transport system permease component CbiQ and related transporter-like protein {ECO:0000313|EMBL:ADZ69871.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_500_bf_scaffold_4190_curated_17
Paenirhodobacter enshiensis, Paenirhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17979..18533)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00035F9567
Cobalamin biosynthesis protein CbiL {ECO:0000313|EMBL:KFI24862.1}; TaxID=1105367 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paenirhodobacter.;" source="Paenirhodobacter enshiensis.;"
CbiL protein
SCNpilot_cont_500_bf_scaffold_4190_curated_18
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18542..19156)
DNA (615bp) protein (205aa)
Cobalt transporter CbiM n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J366_POLGS
cobalt transporter CbiM; K02007 cobalt/nickel transport system permease protein
Cobalt transporter CbiM {ECO:0000313|EMBL:ADZ69873.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_500_bf_scaffold_4190_curated_19
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19176..19952)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI0003817AFB
cobalt ABC transporter periplasmic binding protein CbiN
ABC cobalt transporter, periplasmic binding protein CbiN {ECO:0000313|EMBL:ADZ69874.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_500_bf_scaffold_4190_curated_20
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(20069..22510)
DNA (2442bp) protein (814aa)
UPF0753 protein RoseRS_3853 n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=Y3853_ROSS1 rbh
hypothetical protein; K09822 hypothetical protein
UPF0753 protein RoseRS_3853 {ECO:0000255|HAMAP-Rule:MF_01871}; TaxID=357808 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
SCNpilot_cont_500_bf_scaffold_4190_curated_21
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22528..23961)
DNA (1434bp) protein (478aa)
NADH dehydrogenase (quinone); K05577 NAD(P)H-quinone oxidoreductase subunit 5 [EC:1.6.5.3]
NADH dehydrogenase (Quinone) {ECO:0000313|EMBL:ACA19956.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ACA19956.1};; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
oxidoreductase n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI0003618359
SCNpilot_cont_500_bf_scaffold_4190_curated_22
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24196..25092
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003453F34
LysR family transcriptional regulator {ECO:0000313|EMBL:AJC44837.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
LysR family transcriptional regulator; K03717 LysR family transcriptional regulator, transcriptional activator of nhaA
SCNpilot_cont_500_bf_scaffold_4190_curated_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25115..25894)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PB04_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36760.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4190_curated_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26005..26763
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P5N8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36761.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
short-chain dehydrogenase/reductase SDR; K07124
SCNpilot_cont_500_bf_scaffold_4190_curated_25
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27123..27395
DNA (273bp) protein (91aa)
Transcriptional regulator, TetR family n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8GYW6_CAUCN
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AAK24310.1}; TaxID=190650 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus (strain ATCC 19089 / CB15).;"
SCNpilot_cont_500_bf_scaffold_4190_curated_26
unknown

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comp(27386..27547)
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_4190_curated_27
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27788..29293
DNA (1506bp) protein (502aa)
1-deoxy-D-xylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00315}; EC=2.2.1.7 {ECO:0000255|HAMAP-Rule:MF_00315};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000255|HAMAP-Rule:MF_00315}; Short=DXP synthase {ECO:0000255|HAMAP-Rule:MF_00315};; Short=DXPS {ECO:0000255|HAMAP-Rule:MF_00315};; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Kaistia granuli RepID=UPI00037F3259
Displaying 29 items

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