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scnpilot_cont_500_p_scaffold_57

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Displaying items 1-30 of 153 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_57_1
Pseudomonas sp. BAY1663, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(96..800)
DNA (705bp) protein (235aa)
3-ketoacyl-ACP reductase {ECO:0000313|EMBL:EXF45902.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EXF45902.1};; TaxID=1439940 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonada
Putative short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13Q10_BURXL
short chain dehydrogenase family protein
scnpilot_cont_500_p_scaffold_57_2
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(797..1672)
DNA (876bp) protein (292aa)
2,4-dichlorophenoxyacetate dioxygenase n=1 Tax=Halomonas sp. KM-1 RepID=UPI000288D039
tfdA; alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
taurine catabolism dioxygenase TauD/TfdA
scnpilot_cont_500_p_scaffold_57_3

Not on your lists

comp(1785..2747)
DNA (963bp) protein (321aa)
Transcriptional regulator, LysR family n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J3C7_POLGS
Uncharacterized protein {ECO:0000313|EMBL:KKO08742.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
LysR family transcriptional regulator
scnpilot_cont_500_p_scaffold_57_4
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2901..3752)
DNA (852bp) protein (284aa)
3,4-dihydroxyphenylacetate 2,3-dioxygenase (EC:1.13.11.15)
3%2C4-dihydroxyphenylacetate 2%2C3-dioxygenase {ECO:0000313|EMBL:CKH79425.1}; EC=1.13.11.15 {ECO:0000313|EMBL:CKH79425.1};; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholde
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI0003690EB0 rbh
scnpilot_cont_500_p_scaffold_57_5
unknown

Not on your lists

4073..4675
DNA (603bp) protein (201aa)

This feature has no annotations

scnpilot_cont_500_p_scaffold_57_6
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4773..5153
DNA (381bp) protein (127aa)
DNA-binding protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J1W1_9SPHN
DNA-binding protein {ECO:0000313|EMBL:EQB18120.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium
hemimethylated DNA-binding protein
scnpilot_cont_500_p_scaffold_57_7
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5233..6126)
DNA (894bp) protein (298aa)
Antibiotic transport system permease protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IMA9_9SPHN rbh
antibiotic transport system permease
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosph
scnpilot_cont_500_p_scaffold_57_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6238..6939
DNA (702bp) protein (234aa)
GcrA cell cycle regulator n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI000377A1EC rbh
GcrA cell cycle regulator {ECO:0000313|EMBL:GAO55717.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphin
GcrA cell cycle regulator
scnpilot_cont_500_p_scaffold_57_9
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

7047..8798
DNA (1752bp) protein (584aa)
Uncharacterized protein n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V6T9_TERSS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV83891.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA
scnpilot_cont_500_p_scaffold_57_10
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8870..10057
DNA (1188bp) protein (396aa)
Diguanylate cyclase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E9E5_9SPHN rbh
diguanylate cyclase
Diguanylate cyclase {ECO:0000313|EMBL:EHJ62369.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium
scnpilot_cont_500_p_scaffold_57_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10138..12444)
DNA (2307bp) protein (769aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=163064
polynucleotide phosphorylase (EC:2.7.7.8)
Polyribonucleotide nucleotidyltransferase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAK7_9SPHN rbh
scnpilot_cont_500_p_scaffold_57_12
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12725..12994)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EEK4_9SPHN
30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; N
scnpilot_cont_500_p_scaffold_57_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13000..13917)
DNA (918bp) protein (306aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylat
tRNA pseudouridine synthase B n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EEK3_9SPHN rbh
pseudouridine synthase
scnpilot_cont_500_p_scaffold_57_14
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13922..14602)
DNA (681bp) protein (227aa)
Peptidase M50 n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J603_9SPHN
Peptidase M50 {ECO:0000313|EMBL:EQB19585.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium linda
peptidase M48
scnpilot_cont_500_p_scaffold_57_15
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14602..15183)
DNA (582bp) protein (194aa)
thymidine kinase (EC:2.7.1.21)
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=702113 species="Bacteria; Proteo
Thymidine kinase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IKU9_9SPHN rbh
scnpilot_cont_500_p_scaffold_57_16
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15193..15615)
DNA (423bp) protein (141aa)
ribosome-binding factor A n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B61E3D
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosp
rbfA; ribosome-binding factor A
scnpilot_cont_500_p_scaffold_57_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15767..16132
DNA (366bp) protein (122aa)
Membrane protein n=2 Tax=Sphingobium RepID=T0GXZ7_9SPHN
Transmembrane protein {ECO:0000313|EMBL:GAO56571.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
hypothetical protein
scnpilot_cont_500_p_scaffold_57_18
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16322..16678
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VVB2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU11958.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
hypothetical protein
scnpilot_cont_500_p_scaffold_57_19
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16862..19576)
DNA (2715bp) protein (905aa)
Translation initiation factor IF-2 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=IF2_NOVAD rbh
infB; translation initiation factor IF-2
Translation initiation factor IF-2 {ECO:0000255|HAMAP-Rule:MF_00100}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sourc
scnpilot_cont_500_p_scaffold_57_20
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19533..20285)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZB7_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD47843.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
nucleic-acid-binding protein
scnpilot_cont_500_p_scaffold_57_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20266..21918)
DNA (1653bp) protein (551aa)
transcription elongation factor NusA n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5E4FC rbh
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Nov
transcription elongation factor NusA
scnpilot_cont_500_p_scaffold_57_22
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21921..22493)
DNA (573bp) protein (191aa)
Ribosome maturation factor RimP n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HSV5_9SPHN
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadac
hypothetical protein
scnpilot_cont_500_p_scaffold_57_23
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22636..23406)
DNA (771bp) protein (257aa)
chromosome partitioning protein ParA n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B448B6
Uncharacterized protein {ECO:0000313|EMBL:AHE53074.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
chromosome partitioning protein ParA
scnpilot_cont_500_p_scaffold_57_24
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23458..24483)
DNA (1026bp) protein (342aa)
DNA-binding protein Fis n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G974_NOVAD rbh
Fis family transcriptional regulator
DNA-binding protein Fis {ECO:0000313|EMBL:ABD25599.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
scnpilot_cont_500_p_scaffold_57_25
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24901..25572
DNA (672bp) protein (224aa)
Phage shock protein A, PspA n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G972_NOVAD rbh
Phage shock protein A, PspA {ECO:0000313|EMBL:KHS43185.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphin
phage shock protein A, PspA
scnpilot_cont_500_p_scaffold_57_26
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25576..25893
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G971_NOVAD
Phage shock protein B {ECO:0000313|EMBL:AKH41088.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altereryt
hypothetical protein
scnpilot_cont_500_p_scaffold_57_27
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25890..26267
DNA (378bp) protein (126aa)
Phage shock protein C, PspC n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G970_NOVAD
phage shock protein C, PspC
Phage shock protein C, PspC {ECO:0000313|EMBL:ABD25603.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphi
scnpilot_cont_500_p_scaffold_57_28
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26294..26596
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WI17_9SPHN
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
hypothetical protein
scnpilot_cont_500_p_scaffold_57_29
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26618..26911
DNA (294bp) protein (98aa)
Uncharacterized protein {ECO:0000313|EMBL:EHJ60405.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
scnpilot_cont_500_p_scaffold_57_30
unknown

Not on your lists

26939..27193
DNA (255bp) protein (85aa)

This feature has no annotations

Displaying items 1-30 of 153 in total

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