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scnpilot_cont_500_p_scaffold_104

Search features with annotation key words

Displaying items 1-30 of 119 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_104_1
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..7916)
DNA (7914bp) protein (2638aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY251 RepID=UPI0003713301 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF46698.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
scnpilot_cont_500_p_scaffold_104_2
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8173..8949
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D8A054 rbh
AraC family transcriptional regulator
AraC family transcriptional regulator {ECO:0000313|EMBL:AIF48487.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella j
scnpilot_cont_500_p_scaffold_104_3
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8972..11770)
DNA (2799bp) protein (933aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000367712B rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF48486.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
scnpilot_cont_500_p_scaffold_104_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11771..12487)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034BBB83
Putative signal protein with GGDEF domain {ECO:0000313|EMBL:EIL94925.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sourc
diguanylate cyclase
scnpilot_cont_500_p_scaffold_104_5
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12563..14083)
DNA (1521bp) protein (507aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|H
Lysine--tRNA ligase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8X4_9GAMM rbh
lysyl-tRNA synthetase (class II)
scnpilot_cont_500_p_scaffold_104_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14278..14628)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99301.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter t
hypothetical protein
scnpilot_cont_500_p_scaffold_104_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14671..15792)
DNA (1122bp) protein (374aa)
Peptide chain release factor 2 n=1 Tax=Rhodanobacter denitrificans RepID=M4NDJ7_9GAMM rbh
bacterial peptide chain release factor 2 (bRF-2)
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; Flags: Precursor;; TaxID=666685 species="Bacteria; Prote
scnpilot_cont_500_p_scaffold_104_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16196..17878)
DNA (1683bp) protein (561aa)
asparagine synthase, glutamine-hydrolyzing (EC:6.3.5.4)
Asparagine synthetase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL2_9GAMM rbh
Asparagine synthetase B {ECO:0000313|EMBL:EIL99303.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter t
scnpilot_cont_500_p_scaffold_104_9
unknown

Not on your lists

comp(18030..18149)
DNA (120bp) protein (40aa)

This feature has no annotations

scnpilot_cont_500_p_scaffold_104_10
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18224..18598)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIL3_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHX13020.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.
scnpilot_cont_500_p_scaffold_104_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18799..20598)
DNA (1800bp) protein (600aa)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VWN3_9GAMM
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EIL91624.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" s
ssDNA exonuclease RecJ
scnpilot_cont_500_p_scaffold_104_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20550..21461)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8Y1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95922.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
hypothetical protein
scnpilot_cont_500_p_scaffold_104_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21474..23453)
DNA (1980bp) protein (660aa)
ABC transporter ATPase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8Y2_9GAMM rbh
ABC transporter ATPase {ECO:0000313|EMBL:EIL95923.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp
ABC transporter ATP-binding protein
scnpilot_cont_500_p_scaffold_104_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23638..23991
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8Y3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95924.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
hypothetical protein
scnpilot_cont_500_p_scaffold_104_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24104..25183
DNA (1080bp) protein (360aa)
agmatine deiminase n=1 Tax=Dyella ginsengisoli RepID=UPI000348F963 rbh
Peptidylarginine deiminase-like protein {ECO:0000313|EMBL:EIL99309.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source=
agmatine deiminase
scnpilot_cont_500_p_scaffold_104_16
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25231..26121
DNA (891bp) protein (297aa)
Putative amidohydrolase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8Y5_9GAMM rbh
Putative amidohydrolase {ECO:0000313|EMBL:EIL95926.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter s
acyltransferase
scnpilot_cont_500_p_scaffold_104_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26386..27618
DNA (1233bp) protein (411aa)
Pheromone shutdown-related protein TraB n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8Y6_9GAMM rbh
Pheromone shutdown-related protein TraB {ECO:0000313|EMBL:EIL95927.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source=
pheromone shutdown-related protein TraB
scnpilot_cont_500_p_scaffold_104_18
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27739..28074
DNA (336bp) protein (112aa)
cytochrome C n=1 Tax=Dyella ginsengisoli RepID=UPI0003460FE3
cytochrome C
Cytochrome C {ECO:0000313|EMBL:AIF47877.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
scnpilot_cont_500_p_scaffold_104_19
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28086..28436
DNA (351bp) protein (117aa)
Cytochrome c553 n=1 Tax=Rhodanobacter sp. 115 RepID=I4W8Y8_9GAMM
Cytochrome c553 {ECO:0000313|EMBL:EIL95929.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;
cytochrome c553
scnpilot_cont_500_p_scaffold_104_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28560..29168)
DNA (609bp) protein (203aa)
Fe/S biogenesis protein NfuA n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6T5_9GAMM rbh
Fe/S biogenesis protein NfuA {ECO:0000256|HAMAP-Rule:MF_01637, ECO:0000256|SAAS:SAAS00035357}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae;
thioredoxin-like protein
scnpilot_cont_500_p_scaffold_104_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29323..29664
DNA (342bp) protein (114aa)
pterin-4a-carbinolamine dehydratase (EC:4.2.1.96)
Putative pterin-4-alpha-carbinolamine dehydratase {ECO:0000256|HAMAP-Rule:MF_00434}; Short=PHS {ECO:0000256|HAMAP-Rule:MF_00434};; EC=4.2.1.96 {ECO:0000256|HAMAP-Rule:MF_00434};; 4-alpha-hydroxy-tetra
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXG8_9GAMM
scnpilot_cont_500_p_scaffold_104_22
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29667..31172
DNA (1506bp) protein (502aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000301C3E2 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHX16204.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.
scnpilot_cont_500_p_scaffold_104_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31218..32222)
DNA (1005bp) protein (335aa)
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-) Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
ribosomal large subunit pseudouridine synthase C (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDY9_9GAMM rbh
scnpilot_cont_500_p_scaffold_104_24
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32565..35609
DNA (3045bp) protein (1015aa)
Ribonuclease E {ECO:0000256|HAMAP-Rule:MF_00970}; Short=RNase E {ECO:0000256|HAMAP-Rule:MF_00970};; EC=3.1.26.12 {ECO:0000256|HAMAP-Rule:MF_00970};; TaxID=1379159 species="Bacteria; Proteobacteria; Ga
Ribonuclease E n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI69_9GAMM rbh
ribonuclease E
scnpilot_cont_500_p_scaffold_104_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35686..36339)
DNA (654bp) protein (218aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WI68_9GAMM rbh
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EIL99159.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonad
histidine kinase
scnpilot_cont_500_p_scaffold_104_26
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36882..37598)
DNA (717bp) protein (239aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00015172}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00015172};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiace
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003014641
PpiC-type peptidyl-prolyl cis-trans isomerase
scnpilot_cont_500_p_scaffold_104_27
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37595..38302)
DNA (708bp) protein (236aa)
nitrate reductase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000302AD12
respiratory nitrate reductase subunit gamma
Respiratory nitrate reductase subunit gamma {ECO:0000313|EMBL:AGK58307.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source
scnpilot_cont_500_p_scaffold_104_28
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38337..38954)
DNA (618bp) protein (206aa)
Nitrate reductase molybdenum cofactor assembly chaperone n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BCP6_9RHIZ
nitrate reductase molybdenum cofactor assembly chaperone
Nitrate reductase molybdenum cofactor assembly chaperone {ECO:0000313|EMBL:AGK58306.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrob
scnpilot_cont_500_p_scaffold_104_29
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38954..40495)
DNA (1542bp) protein (514aa)
Nitrate reductase A subunit beta n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BDU8_9RHIZ
narH; nitrate reductase A subunit beta
Nitrate reductase A subunit beta {ECO:0000313|EMBL:AGK58305.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicr
scnpilot_cont_500_p_scaffold_104_30
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40506..44177)
DNA (3672bp) protein (1224aa)
Nitrate reductase, alpha subunit {ECO:0000313|EMBL:EGW20826.1}; EC=1.7.99.4 {ECO:0000313|EMBL:EGW20826.1};; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methyl
respiratory nitrate reductase subunit alpha apoprotein (EC:1.7.99.4)
nitrate reductase A subunit alpha n=1 Tax=Methylosarcina fibrata RepID=UPI00036E270C
Displaying items 1-30 of 119 in total

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