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SCNpilot_cont_750_bf_scaffold_559

Search features with annotation key words

Displaying items 1-30 of 102 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_559_1
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..604)
DNA (603bp) protein (201aa)
Anti-sigma K factor RskA n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y6E8_MESOW
Anti-sigma K factor RskA
Anti-sigma K factor RskA {ECO:0000313|EMBL:AEH85130.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_cont_750_bf_scaffold_559_2
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(601..1140)
DNA (540bp) protein (180aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F122_9RHIZ
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:CCV10046.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
SCNpilot_cont_750_bf_scaffold_559_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1137..1370)
DNA (234bp) protein (78aa)
Site-specific recombinase XerD n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9N4W1_RHILT
transposase number 1 for insertion sequence NGRIS-16b
Site-specific recombinase XerD {ECO:0000313|EMBL:EJB01732.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_cont_750_bf_scaffold_559_4
bacterium YEK0313, Bacteria

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comp(1566..1952)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GXW8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CEJ16004.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_559_5
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1969..2481)
DNA (513bp) protein (171aa)
Nodulation protein NolG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGX1_9RHIZ
Acriflavin resistance protein {ECO:0000313|EMBL:CDX29230.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
acriflavin resistance protein
SCNpilot_cont_750_bf_scaffold_559_6
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2484..2702)
DNA (219bp) protein (73aa)
UPI0003CEE5C5 related cluster n=1 Tax=unknown RepID=UPI0003CEE5C5
Multidrug transporter AcrB {ECO:0000313|EMBL:ESY68577.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
acriflavin resistance protein
SCNpilot_cont_750_bf_scaffold_559_7
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2710..3174)
DNA (465bp) protein (155aa)
Outer membrane efflux protein bepC n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ERI2_9RHIZ
Transporter {ECO:0000313|EMBL:EXL07836.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
type I secretion outer membrane protein, TolC family
SCNpilot_cont_750_bf_scaffold_559_8
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3221..3931)
DNA (711bp) protein (237aa)
Lipoprotein-releasing system ATP-binding protein LolD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXV3_9RHIZ rbh
ABC transporter {ECO:0000313|EMBL:EXL07837.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
putative macrolide export ATP-binding protein/permease MacB; K02003 putative ABC transport system ATP-binding protein rbh
SCNpilot_cont_750_bf_scaffold_559_9
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3933..5135)
DNA (1203bp) protein (401aa)
Putative permease n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1A8_9RHIZ rbh
ABC transporter permease {ECO:0000313|EMBL:EZQ14989.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
putative permease; K02004 putative ABC transport system permease protein rbh
SCNpilot_cont_750_bf_scaffold_559_10
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5132..6325)
DNA (1194bp) protein (398aa)
Efflux transporter, RND family, MFP subunit n=2 Tax=Oligotropha carboxidovorans RepID=B6JDQ8_OLICO rbh
Hemolysin secretion protein D {ECO:0000313|EMBL:EZQ14988.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
HlyD family protein rbh
SCNpilot_cont_750_bf_scaffold_559_11
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6322..6657)
DNA (336bp) protein (112aa)
Transcriptional regulator n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B974_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EZQ15034.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
transcriptional regulator
SCNpilot_cont_750_bf_scaffold_559_12
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6704..7312)
DNA (609bp) protein (203aa)
Transcriptional regulator n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B4D9_9RHIZ rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:EZQ14972.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
transcriptional regulator rbh
SCNpilot_cont_750_bf_scaffold_559_13
unknown

Not on your lists

7572..7751
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_559_14
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8157..9005)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NKD3_9RHIZ rbh
Universal stress protein UspA {ECO:0000313|EMBL:EXL07879.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_559_15
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9052..11013)
DNA (1962bp) protein (654aa)
Heavy metal translocating P-type ATPase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B781_PARDP rbh
ATPase P {ECO:0000313|EMBL:EZQ14950.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
heavy metal translocating P-type ATPase rbh
SCNpilot_cont_750_bf_scaffold_559_16
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11129..12460)
DNA (1332bp) protein (444aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
qseC; sensor protein QseC (EC:2.7.13.3) rbh
Sensor histidine kinase n=2 Tax=Oligotropha carboxidovorans RepID=B6JDT0_OLICO rbh
SCNpilot_cont_750_bf_scaffold_559_17
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12457..13119)
DNA (663bp) protein (221aa)
DNA-binding response regulator n=2 Tax=Oligotropha carboxidovorans RepID=B6JDT1_OLICO rbh
Transcriptional regulator {ECO:0000313|EMBL:EZQ14952.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
DNA-binding response regulator; K02483 two-component system, OmpR family, response regulator rbh
SCNpilot_cont_750_bf_scaffold_559_18
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13258..13662
DNA (405bp) protein (135aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BPR5_OLICM
Uncharacterized protein {ECO:0000313|EMBL:EZQ14953.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_559_19
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13716..14231
DNA (516bp) protein (172aa)
Cytochrome B561 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXU8_9RHIZ
Cytochrome B561 {ECO:0000313|EMBL:EXL07874.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
cytochrome b561 family protein
SCNpilot_cont_750_bf_scaffold_559_20
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14336..15034
DNA (699bp) protein (233aa)
Similar to nodulin 21 n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MMS1_9SPHN rbh
Membrane protein {ECO:0000313|EMBL:EZQ14955.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
nodulin-like protein
SCNpilot_cont_750_bf_scaffold_559_21
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15299..15769
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Citreicella sp. 357 RepID=I1AZ61_9RHOB
Tat pathway signal protein {ECO:0000313|EMBL:EZQ13281.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
Tat (Twin-arginine translocation) pathway signal sequence domain-containing protein
SCNpilot_cont_750_bf_scaffold_559_22
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15782..17989
DNA (2208bp) protein (736aa)
oxidoreductase, FAD/NAD(P)-binding protein; K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] rbh
Oxidoreductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWX2_9RHIZ
N-acetylglucosamine transferase {ECO:0000313|EMBL:EZQ13280.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_cont_750_bf_scaffold_559_23
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17970..18962
DNA (993bp) protein (331aa)
Thiamine biosynthesis lipoprotein ApbE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5T2_9RHIZ
Thiamine biosynthesis protein ApbE {ECO:0000313|EMBL:EXL02677.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
apbE; thiamine biosynthesis lipoprotein ApbE; K03734 thiamine biosynthesis lipoprotein rbh
SCNpilot_cont_750_bf_scaffold_559_24
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19106..19579
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B776_PARDP
Uncharacterized protein {ECO:0000313|EMBL:EXL07867.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_559_25
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19621..20535)
DNA (915bp) protein (305aa)
Transcriptional regulator, LysR family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B777_PARDP rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EZQ13277.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_750_bf_scaffold_559_26
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20631..20855
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9RI23_9RHOB
Heavy metal transport/detoxification protein {ECO:0000313|EMBL:EXL02680.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
heavy metal transport/detoxification protein
SCNpilot_cont_750_bf_scaffold_559_27
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20935..21240
DNA (306bp) protein (102aa)
Heavy metal translocating P-type ATPase; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
Lead, cadmium, zinc and mercury transporting ATPase n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9RUX0_9RHOB
HAD family hydrolase {ECO:0000313|EMBL:EZQ13275.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_cont_750_bf_scaffold_559_28
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21269..21610
DNA (342bp) protein (114aa)
ctpC; putative cation-transporting P-type ATPase CtpC (EC:3.6.3.-); K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
Lead, cadmium, zinc and mercury transporting ATPase n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9RUX0_9RHOB
HAD family hydrolase {ECO:0000313|EMBL:EZQ13275.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_cont_750_bf_scaffold_559_29
unknown

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21663..21959
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_559_30
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22055..22531)
DNA (477bp) protein (159aa)
Cytochrome c class I n=1 Tax=Rhodanobacter denitrificans RepID=I4WYM8_9GAMM
Cytochrome C {ECO:0000313|EMBL:EXL07936.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
cytochrome c2
Displaying items 1-30 of 102 in total

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