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SCNpilot_cont_750_bf_scaffold_562

Search features with annotation key words

Displaying items 1-30 of 101 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_562_1
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..153)
DNA (153bp) protein (51aa)
Uncharacterized protein {ECO:0000313|EMBL:GAF44359.1}; TaxID=1219028 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis NBRC 100605.;"
SCNpilot_cont_750_bf_scaffold_562_2
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

569..1576
DNA (1008bp) protein (336aa)
Putative TIM-barrel fold metal-dependent hydrolase id=4547726 bin=GWF2_Methylomirabilis_70_14 species=Pseudomonas sp. GM67 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidohydrolase 2
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
SCNpilot_cont_750_bf_scaffold_562_3
bacterium YEK0313, Bacteria

Not on your lists

1716..2738
DNA (1023bp) protein (341aa)
Putative oxidoreductase, LLM family n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I189_9BRAD
Alkanal monooxygenase alpha chain {ECO:0000313|EMBL:CEJ13801.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
oxidoreductase
SCNpilot_cont_750_bf_scaffold_562_4
unknown

Not on your lists

comp(3587..4177)
DNA (591bp) protein (197aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_562_5
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4487..6202)
DNA (1716bp) protein (572aa)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:EGP08264.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EGP08264.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Long-chain-fatty-acid--CoA ligase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QK95_9BRAD
AMP-dependent synthetase and ligase
SCNpilot_cont_750_bf_scaffold_562_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6879..7529)
DNA (651bp) protein (217aa)
3-oxoacid CoA-transferase subunit B (EC:2.8.3.5); K01029 3-oxoacid CoA-transferase subunit B [EC:2.8.3.5]
succinyl-CoA:3-ketoacid-CoA transferase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003493276
Succinyl-CoA:3-ketoacid-CoA transferase {ECO:0000313|EMBL:KIZ45073.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_750_bf_scaffold_562_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7555..8259)
DNA (705bp) protein (235aa)
3-oxoacid CoA-transferase subunit A (EC:2.8.3.5); K01028 3-oxoacid CoA-transferase subunit A [EC:2.8.3.5]
3-oxoacid CoA-transferase, subunit A n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13B68_RHOPS
Succinyl-CoA:3-ketoacid-CoA transferase {ECO:0000313|EMBL:KIZ45072.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_750_bf_scaffold_562_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8524..10443
DNA (1920bp) protein (640aa)
AsmA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNX5_NITHX
AsmA; K07289 AsmA protein
AsmA {ECO:0000313|EMBL:ABE62072.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_562_9
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10452..11270)
DNA (819bp) protein (273aa)
ABC-type spermidine/putrescine transport system, permease component II n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2W7K8_9BRAD rbh
ABC-type spermidine/putrescine transport system, permease component II {ECO:0000313|EMBL:EJN14762.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
binding-protein-dependent transport system inner membrane protein; K11074 putrescine transport system permease protein
SCNpilot_cont_750_bf_scaffold_562_10
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11267..12178)
DNA (912bp) protein (304aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J045_RHOP2
binding-protein-dependent transport system inner membrane protein; K11075 putrescine transport system permease protein
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:KJC38518.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
SCNpilot_cont_750_bf_scaffold_562_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12180..13334)
DNA (1155bp) protein (385aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
Spermidine/putrescine ABC transporter ATP-binding subunit n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J046_RHOP2
spermidine/putrescine ABC transporter ATP-binding subunit; K11076 putrescine transport system ATP-binding protein
SCNpilot_cont_750_bf_scaffold_562_12
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13493..16054)
DNA (2562bp) protein (854aa)
diguanylate cyclase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003711D44
Bradyrhizobium elkanii strain UASWS1015 Contig159, whole genome shotgun sequence {ECO:0000313|EMBL:KIU52365.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_562_13
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16436..17539
DNA (1104bp) protein (368aa)
Peptide-methionine (R)-S-oxide reductase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HBX3_9BRAD rbh
Peptide-methionine (R)-S-oxide reductase {ECO:0000313|EMBL:ERF82273.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
dehydrogenase
SCNpilot_cont_750_bf_scaffold_562_14
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17689..17874)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RY25_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD86852.1}; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_562_15
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18119..18325
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z3E0_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM87332.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_750_bf_scaffold_562_16
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18552..19097
DNA (546bp) protein (182aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii
phosphoribosylaminoimidazole carboxylase catalytic subunit; K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000315C978
SCNpilot_cont_750_bf_scaffold_562_17
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19094..20203
DNA (1110bp) protein (370aa)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhiz
purK; phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21); K01589 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
Phosphoribosylaminoimidazole carboxylase ATPase subunit (AIR carboxylase) (AIRC) n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TYY0_9BRAD
SCNpilot_cont_750_bf_scaffold_562_18
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20262..20984)
DNA (723bp) protein (241aa)
aquaporin n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003152D30 rbh
Aquaporin Z {ECO:0000256|HAMAP-Rule:MF_01146}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
aqpZ; aquaporin Z; K06188 aquaporin Z rbh
SCNpilot_cont_750_bf_scaffold_562_19
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21267..21575
DNA (309bp) protein (103aa)
30S ribosomal protein S21 n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G0Z0_9BRAD
30S ribosomal protein S21; K02970 small subunit ribosomal protein S21
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
SCNpilot_cont_750_bf_scaffold_562_20
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21649..22404)
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037C9D04
Uncharacterized protein {ECO:0000313|EMBL:KGJ63481.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_562_21
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22692..24188)
DNA (1497bp) protein (499aa)
Putative uncharacterized protein n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QKW6_BRESC rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADL01780.1}; Flags: Precursor;; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
SCNpilot_cont_750_bf_scaffold_562_22
unknown

Not on your lists

comp(24272..24670)
DNA (399bp) protein (133aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_562_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24686..24973)
DNA (288bp) protein (96aa)
cupin n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034DC783
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD06150.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_750_bf_scaffold_562_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24992..26083)
DNA (1092bp) protein (364aa)
Calcium/proton exchanger n=1 Tax=Afipia broomeae ATCC 49717 PF67_9BRAD">RepID=K8PF67_9BRAD
Calcium/proton exchanger {ECO:0000313|EMBL:EKS37033.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative ionic transporter; K07300 Ca2+:H+ antiporter
SCNpilot_cont_750_bf_scaffold_562_25
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26184..27584)
DNA (1401bp) protein (467aa)
NAD(P) transhydrogenase, beta subunit; K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2] rbh
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNZ0_NITHX rbh
SCNpilot_cont_750_bf_scaffold_562_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27640..27963)
DNA (324bp) protein (108aa)
NAD(P) transhydrogenase subunit alpha; K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
NAD(P) transhydrogenase subunit alpha n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VNU7_RHOPX
NAD(P) transhydrogenase subunit alpha part {ECO:0000313|EMBL:ACF03152.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_750_bf_scaffold_562_27
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27976..29106)
DNA (1131bp) protein (377aa)
NAD(P)(+) transhydrogenase (EC:1.6.1.2); K00324 NAD(P) transhydrogenase subunit alpha [EC:1.6.1.2]
NAD(P)(+) transhydrogenase (AB-specific) {ECO:0000313|EMBL:ABE62055.1}; EC=1.6.1.2 {ECO:0000313|EMBL:ABE62055.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
NAD(P) transhydrogenase subunit alpha n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNZ2_NITHX
SCNpilot_cont_750_bf_scaffold_562_28
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29179..29331)
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 PF72_9BRAD">RepID=K8PF72_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37038.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
aa3 type cytochrome c oxidase subunit IV
SCNpilot_cont_750_bf_scaffold_562_29
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29437..29823)
DNA (387bp) protein (129aa)
death-on-curing protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A5E97
death-on-curing family protein; K07341 death on curing protein
Death-on-curing family protein {ECO:0000313|EMBL:ADU45946.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_750_bf_scaffold_562_30
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29820..30080)
DNA (261bp) protein (87aa)
Putative transcriptional regulator, AbrB family n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SGG7_9BRAD
Putative transcriptional regulator, AbrB family {ECO:0000313|EMBL:CCD93294.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
AbrB family transcriptional regulator
Displaying items 1-30 of 101 in total

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