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SCNpilot_cont_750_bf_scaffold_701

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_701_1
unknown

Not on your lists

comp(1..162)
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_701_2
RBG_16_Gallionellales_56_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(335..697)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9P9S4_9BURK
hypothetical protein
Tax=RBG_16_Gallionellales_56_9_curated
SCNpilot_cont_750_bf_scaffold_701_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(773..1126)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DSZ5_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO48689.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_701_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1187..4312)
DNA (3126bp) protein (1042aa)
Cobalt-zinc-cadmium resistance protein CzcA Cation efflux system protein CusA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIM3_9PROT rbh
Cation transporter {ECO:0000313|EMBL:KIO48135.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
CzcA family heavy metal efflux pump; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA rbh
SCNpilot_cont_750_bf_scaffold_701_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4314..5933)
DNA (1620bp) protein (540aa)
Probable Co/Zn/Cd efflux system membrane fusion protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJ49_9PROT rbh
RND transporter {ECO:0000313|EMBL:KIO48136.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
RND family efflux transporter MFP subunit; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB rbh
SCNpilot_cont_750_bf_scaffold_701_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5930..7306)
DNA (1377bp) protein (459aa)
Heavy metal RND efflux outer membrane protein,CzcC family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIR3_9PROT rbh
Transporter {ECO:0000313|EMBL:KIO48137.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Outer membrane efflux protein rbh
SCNpilot_cont_750_bf_scaffold_701_7
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7303..7830)
DNA (528bp) protein (176aa)
Probable Co/Zn/Cd efflux system membrane fusion protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGW2_9PROT
Probable Co/Zn/Cd efflux system membrane fusion protein {ECO:0000313|EMBL:CCU62521.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
copper binding periplasmic protein cusF
SCNpilot_cont_750_bf_scaffold_701_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8642..9244)
DNA (603bp) protein (201aa)
IncP-type DNA transfer maturation peptidase TraF n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJG8_9PROT
IncP-type DNA transfer maturation peptidase TraF {ECO:0000313|EMBL:CCU63566.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
conjugal transfer peptidase TraF
SCNpilot_cont_750_bf_scaffold_701_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9274..11145)
DNA (1872bp) protein (624aa)
IncP-type DNA transfer coupling protein TraG n=1 Tax=Nitrosospira sp. APG3 RepID=M5DW64_9PROT
IncP-type DNA transfer coupling protein TraG {ECO:0000313|EMBL:CCU63565.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
SCNpilot_cont_750_bf_scaffold_701_10
Candidatus Accumulibacter sp. BA-92, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11142..13097)
DNA (1956bp) protein (652aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RVW0_ACCPU
Conjugal transfer relaxase TraI {ECO:0000313|EMBL:EXI79996.1}; TaxID=1454003 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-92.;"
conjugal transfer relaxase TraI
SCNpilot_cont_750_bf_scaffold_701_11
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13094..13504)
DNA (411bp) protein (137aa)
Protein TraJ (Relaxosome protein) n=1 Tax=Burkholderia pseudomallei Pakistan 9 RepID=C0YE08_BURPE
Protein traJ {ECO:0000313|EMBL:AIO88053.1}; TaxID=28450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (Pseudomonas pseudomallei).;"
conjugal transfer relaxosome component TraJ
SCNpilot_cont_750_bf_scaffold_701_12
Xylella fastidiosa, Xylella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13834..14202
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI0002E10AA3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB93644.1}; TaxID=405441 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.;" source="Xylella fastidiosa (strain M23).;"
SCNpilot_cont_750_bf_scaffold_701_13
Methylomicrobium alcaliphilum, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14202..14933
DNA (732bp) protein (244aa)
Protein traL n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4T4Q5_META2
Protein traL {ECO:0000313|EMBL:CCE25810.1}; TaxID=1091494 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM; B-2133 / 20Z).;"
conjugal transfer protein TraL
SCNpilot_cont_750_bf_scaffold_701_14
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14930..15445
DNA (516bp) protein (172aa)
conjugal transfer protein TraM n=1 Tax=Methylomicrobium buryatense RepID=UPI000345963A
conjugal transfer protein TraM
Uncharacterized protein {ECO:0000313|EMBL:ACV37766.1}; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_cont_750_bf_scaffold_701_15
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15510..15878)
DNA (369bp) protein (123aa)
Stable inheritance protein n=1 Tax=uncultured bacterium RepID=J9S0H0_9BACT
traO; conjugation protein TraO
KfrB {ECO:0000313|EMBL:AEX00443.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
SCNpilot_cont_750_bf_scaffold_701_16

Not on your lists

comp(15891..16781)
DNA (891bp) protein (297aa)
KorB n=1 Tax=uncultured bacterium RepID=G9FB77_9BACT
KorB {ECO:0000313|EMBL:AEV57068.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein; K03497 chromosome partitioning protein, ParB family
SCNpilot_cont_750_bf_scaffold_701_17
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17168..18580)
DNA (1413bp) protein (471aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000371A953 rbh
initiator RepB protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_cont_750_bf_scaffold_701_18
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19141..20253
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002D9D866 rbh
cobyrinic acid ac-diamide synthase rbh
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_cont_750_bf_scaffold_701_19
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20255..21235
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002DC2E76 rbh
parB-like partition protein; K03497 chromosome partitioning protein, ParB family
ParB-like partition protein {ECO:0000313|EMBL:ACC76203.1}; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phymatum (strain DSM 17167 / STM815).;"
SCNpilot_cont_750_bf_scaffold_701_20

Not on your lists

21706..22137
DNA (432bp) protein (144aa)
Conjugative transfer protein n=1 Tax=uncultured bacterium RepID=Q5W3K3_9BACT
Conjugative transfer protein {ECO:0000313|EMBL:AFV47180.1}; TrbA regulator protein {ECO:0000313|EMBL:CAG25998.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
conjugal transfer protein TrbA
SCNpilot_cont_750_bf_scaffold_701_21
Sphingomonas sp. A1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22273..23247
DNA (975bp) protein (325aa)
TrbB n=1 Tax=Sphingomonas sp. A1 RepID=Q4AC54_9SPHN rbh
TrbB {ECO:0000313|EMBL:BAE19729.1}; TaxID=90322 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. A1.;"
trbB; P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11 rbh
SCNpilot_cont_750_bf_scaffold_701_22
Methylophaga frappieri, Methylophaga, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23250..23831
DNA (582bp) protein (194aa)
Conjugal transfer protein TrbC n=1 Tax=Alcanivorax hongdengensis A-11-3 RepID=L0W8U8_9GAMM
Conjugative transfer protein TrbC; K03197 type IV secretion system protein VirB2
Conjugative transfer protein TrbC {ECO:0000313|EMBL:AFJ03829.1}; Flags: Precursor;; TaxID=754477 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Piscirickettsiaceae; Methylophaga.;" source="Methylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7).;"
SCNpilot_cont_750_bf_scaffold_701_23
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23818..24129
DNA (312bp) protein (104aa)
Type IV secretory pathway, VirB3-like family protein n=1 Tax=Pseudomonas putida S610 RepID=V6JCB2_PSEPU
Type IV secretory pathway, VirB3-like family protein {ECO:0000313|EMBL:EST17450.1}; TaxID=1399145 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida S610.;"
trbD; conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
SCNpilot_cont_750_bf_scaffold_701_24
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24126..26720
DNA (2595bp) protein (865aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RW41_ACCPU rbh
conjugal transfer protein TrbE; K03199 type IV secretion system protein VirB4 rbh
Uncharacterized protein {ECO:0000313|EMBL:ACV37851.1}; Flags: Precursor;; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_cont_750_bf_scaffold_701_25
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26717..27601
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RW40_ACCPU
Conjugal transfer protein TrbF {ECO:0000313|EMBL:EXI84247.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
SCNpilot_cont_750_bf_scaffold_701_26
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27614..28786
DNA (1173bp) protein (391aa)
TrbG mating pair formation protein n=1 Tax=Burkholderia cepacia RepID=K4IYR8_BURCE
TrbG mating pair formation protein {ECO:0000313|EMBL:AFU76001.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
trbG; conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9 rbh
SCNpilot_cont_750_bf_scaffold_701_27
Candidatus Accumulibacter phosphatis, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28780..29370
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RW39_ACCPU
conjugal transfer protein TrbH
Uncharacterized protein {ECO:0000313|EMBL:ACV37849.1}; Flags: Precursor;; TaxID=522306 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Accumulibacter phosphatis (strain UW-1).;"
SCNpilot_cont_750_bf_scaffold_701_28

Not on your lists

29381..30745
DNA (1365bp) protein (455aa)
Bacterial conjugation TrbI-like protein n=2 Tax=Bacteria RepID=H7EGD9_SALHO rbh
Conjugative transfer protein {ECO:0000313|EMBL:AFV47188.1}; TrbI {ECO:0000313|EMBL:AEV56650.1}; TrbI conjugal transfer protein {ECO:0000313|EMBL:CAG26006.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
conjugation trbi family protein; K03195 type IV secretion system protein VirB10 rbh
SCNpilot_cont_750_bf_scaffold_701_29
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30738..31511
DNA (774bp) protein (258aa)
TrbJ n=1 Tax=Bordetella pertussis RepID=Q08KZ3_BORPT
TrbJ {ECO:0000313|EMBL:BAF33465.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
trbJ; conjugal transfer protein TrbJ
SCNpilot_cont_750_bf_scaffold_701_30

Not on your lists

31726..33048
DNA (1323bp) protein (441aa)
Mating pair formation protein n=1 Tax=uncultured bacterium RepID=J9R8T0_9BACT
Mating pair formation protein {ECO:0000313|EMBL:AFR44387.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
trbL; P-type conjugative transfer protein TrbL; K07344 type IV secretion system protein TrbL rbh
Displaying items 1-30 of 55 in total

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