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SCNpilot_cont_750_bf_scaffold_541

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_541_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(158..766)
DNA (609bp) protein (203aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMD1_9GAMM rbh
methyltransferase family protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_bf_scaffold_541_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

873..2531
DNA (1659bp) protein (553aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WDB3_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL97454.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein rbh
SCNpilot_cont_750_bf_scaffold_541_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2768..3967
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WX57_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG87423.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_541_4
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3999..4277
DNA (279bp) protein (93aa)
Uncharacterized protein (Fragment) n=1 Tax=Rhodanobacter sp. 115 RepID=I4VKI7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87728.1}; Flags: Fragment;; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_cont_750_bf_scaffold_541_5
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4292..5836
DNA (1545bp) protein (515aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00031CD2F7 rbh
Uncharacterized protein {ECO:0000313|EMBL:AIF48680.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein rbh
SCNpilot_cont_750_bf_scaffold_541_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5906..6841)
DNA (936bp) protein (312aa)
Sensor protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFS3_9GAMM
sensor protein
Sensor protein {ECO:0000313|EMBL:AGG88463.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_541_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6841..7203)
DNA (363bp) protein (121aa)
PadR family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7I5_9GAMM
PadR family transcriptional regulator {ECO:0000313|EMBL:EIL95426.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative transcriptional regulator
SCNpilot_cont_750_bf_scaffold_541_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7350..8729
DNA (1380bp) protein (460aa)
D-alanine/D-serine/glycine permease n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W4B7_9GAMM
D-alanine/D-serine/glycine permease {ECO:0000313|EMBL:EIL94308.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
gamma-aminobutyrate permease-like transporter
SCNpilot_cont_750_bf_scaffold_541_9
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8763..9689
DNA (927bp) protein (309aa)
Proline hydroxylase-like protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7I7_9GAMM rbh
Proline hydroxylase-like protein {ECO:0000313|EMBL:EIL95428.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
proline hydroxylase-like protein
SCNpilot_cont_750_bf_scaffold_541_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9753..10691
DNA (939bp) protein (313aa)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMC6_9GAMM rbh
Peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:EIM00618.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family
SCNpilot_cont_750_bf_scaffold_541_11
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10784..11362
DNA (579bp) protein (193aa)
Phospholipid N-methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLB2_9GAMM
phospholipid N-methyltransferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_bf_scaffold_541_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11459..12103
DNA (645bp) protein (215aa)
Putative transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7J1_9GAMM rbh
Putative transcriptional regulator {ECO:0000313|EMBL:EIL95432.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_541_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12181..12972
DNA (792bp) protein (264aa)
Putative siderophore-interacting protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7J3_9GAMM rbh
Putative siderophore-interacting protein {ECO:0000313|EMBL:EIL95434.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
mxcB; iron chelator utilization protein rbh
SCNpilot_cont_750_bf_scaffold_541_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13100..15235
DNA (2136bp) protein (712aa)
Uncharacterized protein (Fragment) n=1 Tax=Rhodanobacter sp. 115 RepID=I4W7J4_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL95435.1}; Flags: Fragment;; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
uncharacterized protein involved in outer membrane biogenesis rbh
SCNpilot_cont_750_bf_scaffold_541_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15295..16224
DNA (930bp) protein (310aa)
Integral membrane protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMC3_9GAMM
Integral membrane protein {ECO:0000313|EMBL:EIM00615.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative permease, DMT superfamily
SCNpilot_cont_750_bf_scaffold_541_16
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16244..17143)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003479466 rbh
Transcriptional regulator {ECO:0000313|EMBL:AIF48705.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ptxR; transcriptional regulator PtxR
SCNpilot_cont_750_bf_scaffold_541_17
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17255..17896
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003460E32
NAD-dependent dehydratase {ECO:0000313|EMBL:AHX14034.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
NAD-dependent epimerase/dehydratase; K07118
SCNpilot_cont_750_bf_scaffold_541_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17890..18507)
DNA (618bp) protein (206aa)
Cytochrome c family protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WGI5_9GAMM
Cytochrome c family protein {ECO:0000313|EMBL:EIL98576.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ketosteroid isomerase-like enzyme
SCNpilot_cont_750_bf_scaffold_541_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18517..19656)
DNA (1140bp) protein (380aa)
Copper resistance B n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WMA6_9GAMM
Copper resistance B {ECO:0000313|EMBL:EIM00598.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
uncharacterized protein involved in copper resistance
SCNpilot_cont_750_bf_scaffold_541_20
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19653..21329)
DNA (1677bp) protein (559aa)
copper oxidase n=1 Tax=Dyella ginsengisoli RepID=UPI0003458AA3
Copper resistance protein CopA {ECO:0000313|EMBL:KGI77872.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
copper-resistance protein, CopA family
SCNpilot_cont_750_bf_scaffold_541_21
unknown

Not on your lists

comp(21565..21918)
DNA (354bp) protein (118aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_541_22
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21971..22954
DNA (984bp) protein (328aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000256|HAMAP-Rule:MF_00934}; EC=2.1.1.266 {ECO:0000256|HAMAP-Rule:MF_00934};; 23S rRNA (adenine(2030)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; 23S rRNA m6A2030 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00934}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000366B517 rbh
protein involved in catabolism of external DNA
SCNpilot_cont_750_bf_scaffold_541_23
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22989..23498
DNA (510bp) protein (170aa)
Starvation-inducible outer membrane lipoprotein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VVL6_9GAMM
Starvation-inducible outer membrane lipoprotein {ECO:0000313|EMBL:EIL91257.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
starvation-inducible outer membrane lipoprotein
SCNpilot_cont_750_bf_scaffold_541_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23582..24124
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQE8_9GAMM
putative methyltransferase, YaeB/AF_0241 family
Putative methyltransferase, YaeB/AF_0241 family {ECO:0000313|EMBL:AGG87633.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_541_25
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24225..24827
DNA (603bp) protein (201aa)
Sortase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VN31_9GAMM
Sortase {ECO:0000313|EMBL:EIL88622.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
sortase-like acyltransferase
SCNpilot_cont_750_bf_scaffold_541_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25052..28642
DNA (3591bp) protein (1197aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
transcription-repair coupling factor Mfd; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] rbh
Transcription-repair-coupling factor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W615_9GAMM rbh
SCNpilot_cont_750_bf_scaffold_541_27
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28656..30215)
DNA (1560bp) protein (520aa)
UPF0061 protein UU5_04194 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WF81_9GAMM
UPF0061 protein UU5_04194 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_541_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30436..31206)
DNA (771bp) protein (257aa)
Putative methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WD67_9GAMM rbh
Putative methyltransferase {ECO:0000313|EMBL:EIL97408.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative methyltransferase rbh
SCNpilot_cont_750_bf_scaffold_541_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31290..31868)
DNA (579bp) protein (193aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
2'-5' RNA ligase n=1 Tax=Rhodanobacter denitrificans RepID=M4NF94_9GAMM
2'-5' RNA ligase
SCNpilot_cont_750_bf_scaffold_541_30
unknown

Not on your lists

32091..32291
DNA (201bp) protein (67aa)

This feature has no annotations

Displaying items 1-30 of 44 in total

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