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SCNpilot_cont_750_bf_scaffold_2070

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_2070_1
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..640)
DNA (639bp) protein (213aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WW44_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAM02443.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_cont_750_bf_scaffold_2070_2
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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894..1412
DNA (519bp) protein (173aa)
RNA polymerase sigma factor, sigma-70 family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WW40_9SPHN
DNA, contig: SP663 {ECO:0000313|EMBL:GAN15690.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_cont_750_bf_scaffold_2070_3
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1501..2466
DNA (966bp) protein (322aa)
FecR family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WW39_9SPHN rbh
Putative transmembrane sensor {ECO:0000313|EMBL:GAM02438.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
anti-FecI sigma factor FecR; K07165 transmembrane sensor
SCNpilot_cont_750_bf_scaffold_2070_4
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2567..3685
DNA (1119bp) protein (373aa)
Secretin and TonB N terminus short domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WW38_9SPHN
Putative TonB-dependent receptor {ECO:0000313|EMBL:GAM02437.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
TonB-dependent receptor-like protein
SCNpilot_cont_750_bf_scaffold_2070_5
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3752..4969
DNA (1218bp) protein (406aa)
Secretin and TonB N terminus short domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WW38_9SPHN
DNA, contig: SP663 {ECO:0000313|EMBL:GAN15688.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
TonB-dependent receptor
SCNpilot_cont_750_bf_scaffold_2070_6
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5166..5942)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037696D4 rbh
AraC family transcriptional regulator {ECO:0000313|EMBL:KGM35896.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
AraC family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_2070_7
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6036..7523
DNA (1488bp) protein (496aa)
NodT family efflux transporter outer membrane factor lipoprotein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WLU3_9SPHN rbh
NodT family efflux transporter outer membrane factor lipoprotein {ECO:0000313|EMBL:EIZ81306.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
outer membrane efflux protein rbh
SCNpilot_cont_750_bf_scaffold_2070_8
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7531..8640
DNA (1110bp) protein (370aa)
Membrane fusion protein family auxiliary transport protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9CCY9_9SPHN rbh
Membrane fusion protein family auxiliary transport protein {ECO:0000313|EMBL:EIZ81305.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
emrA5; multidrug resistance protein A rbh
SCNpilot_cont_750_bf_scaffold_2070_9
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8637..8894
DNA (258bp) protein (86aa)
Drug resistance transporter, EmrB/QacA subfamily n=2 Tax=Burkholderia cenocepacia RepID=A0AX13_BURCH
EmrB/QacA family drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B
DSBA oxidoreductase {ECO:0000313|EMBL:KGY54842.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
SCNpilot_cont_750_bf_scaffold_2070_10
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8846..9646
DNA (801bp) protein (267aa)
EmrB/QacA family drug resistance transporter n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L9V6_9SPHN rbh
EmrB/QacA family drug resistance transporter {ECO:0000313|EMBL:EIZ81304.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
emrB4; multidrug resistance protein B
Displaying 10 items

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