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SCNpilot_cont_750_bf_scaffold_3340

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_3340_1
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..919
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035C6CCC
Peptidase M28 {ECO:0000313|EMBL:KHA64333.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
peptidase M28
SCNpilot_cont_750_bf_scaffold_3340_2
unknown

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comp(945..1289)
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_3340_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1337..1777)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000381F83F
Sphingomonas taxi strain 30a NODE_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28000.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
GAF domain-containing protein; K07170 GAF domain-containing protein
SCNpilot_cont_750_bf_scaffold_3340_4
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1976..2380)
DNA (405bp) protein (135aa)
peptide chain release factor I n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003629E41
Peptide chain release factor 1 {ECO:0000313|EMBL:KHA64335.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein; K15034 ribosome-associated protein
SCNpilot_cont_750_bf_scaffold_3340_5
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2373..3035)
DNA (663bp) protein (221aa)
Pseudouridine synthase {ECO:0000313|EMBL:EZP54652.1}; EC=5.4.99.- {ECO:0000313|EMBL:EZP54652.1};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
pseudouridine synthase; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] rbh
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036140D4
SCNpilot_cont_750_bf_scaffold_3340_6
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3082..3813
DNA (732bp) protein (244aa)
hypothetical protein n=2 Tax=Sphingomonas melonis RepID=UPI00037466FA
D-alanyl-D-alanine carboxypeptidase family protein {ECO:0000313|EMBL:EZP54651.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
D-alanyl-D-alanine carboxypeptidase
SCNpilot_cont_750_bf_scaffold_3340_7
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3798..4586)
DNA (789bp) protein (263aa)
Extradiol ring-cleavage dioxygenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W649_9SPHN
Extradiol ring-cleavage dioxygenase III subunit B {ECO:0000313|EMBL:KGB54939.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
extradiol ring-cleavage dioxygenase
SCNpilot_cont_750_bf_scaffold_3340_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4637..5239)
DNA (603bp) protein (201aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
NAD(P)H quinone oxidoreductase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CB08C
wrbA; TrpR binding protein WrbA; K03809 Trp repressor binding protein
SCNpilot_cont_750_bf_scaffold_3340_9
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5310..6032)
DNA (723bp) protein (241aa)
Pirin family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WYG5_9SPHN
Putative pirin-related protein {ECO:0000313|EMBL:GAM00273.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
pirin-related protein; K06911
SCNpilot_cont_750_bf_scaffold_3340_10
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6127..7014
DNA (888bp) protein (296aa)
LysR family transcriptional regulator n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036F1540
Putative LysR family transcriptional regulator {ECO:0000313|EMBL:GAM00272.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_750_bf_scaffold_3340_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7268..7666
DNA (399bp) protein (133aa)
ISBm1, transposase orfA n=2 Tax=Rhizobiales RepID=A7IBW4_XANP2
ISBm1, transposase orfA
Uncharacterized protein {ECO:0000313|EMBL:EKS34547.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_750_bf_scaffold_3340_12
Asticcacaulis sp. YBE204, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7642..8064
DNA (423bp) protein (141aa)
Transposase IS4 n=1 Tax=Asticcacaulis sp. YBE204 RepID=V4NFN9_9CAUL
Transposase IS4 {ECO:0000313|EMBL:ESQ80667.1}; TaxID=1282363 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. YBE204.;"
transposase IS4 family protein
SCNpilot_cont_750_bf_scaffold_3340_13
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8147..8254
DNA (108bp) protein (36aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IP81_9SPHN
Transposase {ECO:0000313|EMBL:EZP65385.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
transposase
Displaying 13 items

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