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SCNPILOT_CONT_300_BF_Rhizobiales_62_8

SCNPILOT_EXPT_1000_BF_Alphaproteobacteria_61_6
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_1000_bf_UNK

Properties

Avg. coverage: 6.28 Longest contig: 23.25 Kbp Bin length: 1.98 Mbp GC content: 61.26 %
Contigs count: 400 Features count: 2348 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 32 / 55 BSCG 33 / 51 MC: 1 ASCG 9 / 38
Displaying items 251-300 of 400 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_20797
Class: Alphaproteobacteria (50%)
6 5138 bp 61.41 5.74 82.79
SCNpilot_expt_1000_bf_scaffold_17874 3 2309 bp 55.35 5.74 67.69
SCNpilot_expt_1000_bf_scaffold_11713
Domain: Bacteria (66.67%)
6 5541 bp 58.98 5.73 79.10
SCNpilot_expt_1000_bf_scaffold_16620
Order: Rhizobiales (66.67%)
3 2448 bp 60.01 5.72 71.57
SCNpilot_expt_1000_bf_scaffold_5724
Order: Rhizobiales (80%)
5 6470 bp 59.43 5.72 75.39
SCNpilot_expt_1000_bf_scaffold_17004
Species: Parvibaculum lavamentivorans (50%)
4 2403 bp 63.55 5.72 95.88
SCNpilot_expt_1000_bf_scaffold_8125
Class: Alphaproteobacteria (87.5%)
8 6857 bp 62.48 5.72 92.14
SCNpilot_expt_1000_bf_scaffold_11480
Class: Alphaproteobacteria (85.71%)
7 6824 bp 61.28 5.72 89.07
SCNpilot_expt_1000_bf_scaffold_13905
Order: Rhizobiales (50%)
8 6091 bp 57.40 5.71 78.36
SCNpilot_expt_1000_bf_scaffold_3400
Class: Alphaproteobacteria (61.54%)
13 12831 bp 63.20 5.69 89.83
SCNpilot_expt_1000_bf_scaffold_45576
Species: R_OD1_Kaiserbacteria_53_31 (50%)
2 1537 bp 63.37 5.69 75.15
SCNpilot_expt_1000_bf_scaffold_7117
Class: Alphaproteobacteria (77.78%)
9 9154 bp 62.43 5.68 88.06
SCNpilot_expt_1000_bf_scaffold_14014
Order: Rhizobiales (50%)
6 7176 bp 59.18 5.68 80.56
SCNpilot_expt_1000_bf_scaffold_22356
Class: Alphaproteobacteria (50%)
6 3083 bp 59.71 5.68 85.24
SCNpilot_expt_1000_bf_scaffold_19836
Order: Sphingomonadales (66.67%)
3 2112 bp 61.98 5.68 97.30
SCNpilot_expt_1000_bf_scaffold_21339
Phylum: Proteobacteria (66.67%)
3 1987 bp 59.29 5.66 92.40
SCNpilot_expt_1000_bf_scaffold_11008
Order: Caulobacterales (50%)
6 5921 bp 59.33 5.66 86.89
SCNpilot_expt_1000_bf_scaffold_12873
Order: Rhizobiales (50%)
4 5623 bp 62.28 5.65 88.30
SCNpilot_expt_1000_bf_scaffold_18698
Species: alpha proteobacterium MA2 (50%)
2 2220 bp 61.49 5.63 60.00
SCNpilot_expt_1000_bf_scaffold_5423
Order: Rhizobiales (60%)
5 6933 bp 57.44 5.63 101.69
SCNpilot_expt_1000_bf_scaffold_2812
Class: Alphaproteobacteria (85.71%)
21 15094 bp 62.18 5.63 94.67
SCNpilot_expt_1000_bf_scaffold_20828 5 3952 bp 57.67 5.63 60.58
SCNpilot_expt_1000_bf_scaffold_40445
Species: Caulobacter vibrioides (100%)
1 1156 bp 56.23 5.62 94.46
SCNpilot_expt_1000_bf_scaffold_9616
Class: Alphaproteobacteria (50%)
12 10669 bp 61.82 5.62 86.63
SCNpilot_expt_1000_bf_scaffold_9962
Phylum: Proteobacteria (80%)
5 5071 bp 61.90 5.62 85.43
SCNpilot_expt_1000_bf_scaffold_5877
Class: Alphaproteobacteria (62.5%)
8 8658 bp 61.13 5.60 84.30
SCNpilot_expt_1000_bf_scaffold_44753
Species: Sphingomonas changbaiensis (50%)
2 1027 bp 64.17 5.60 99.61
SCNpilot_expt_1000_bf_scaffold_3054
Order: Rhizobiales (50%)
12 9210 bp 60.37 5.59 94.59
SCNpilot_expt_1000_bf_scaffold_7843
Class: Alphaproteobacteria (70%)
10 5727 bp 60.08 5.59 81.82
SCNpilot_expt_1000_bf_scaffold_57734
Class: Alphaproteobacteria (100%)
3 1297 bp 65.07 5.59 94.60
SCNpilot_expt_1000_bf_scaffold_19185
Species: Candidatus Phaeomarinobacter ectocarpi (50%)
2 2910 bp 59.07 5.58 67.01
SCNpilot_expt_1000_bf_scaffold_6547
Class: Alphaproteobacteria (57.14%)
7 5073 bp 61.50 5.57 87.76
SCNpilot_expt_1000_bf_scaffold_20371
Class: Alphaproteobacteria (100%)
3 2065 bp 60.73 5.57 100.10
SCNpilot_expt_1000_bf_scaffold_14475
Class: Alphaproteobacteria (77.78%)
9 6671 bp 61.55 5.55 87.11
SCNpilot_expt_1000_bf_scaffold_9045
Class: Alphaproteobacteria (55.56%)
9 8742 bp 58.46 5.55 73.13
SCNpilot_expt_1000_bf_scaffold_42892
Species: Acidomonas methanolica (50%)
2 1083 bp 58.82 5.54 73.68
SCNpilot_expt_1000_bf_scaffold_18073
Class: Alphaproteobacteria (66.67%)
3 3568 bp 59.30 5.54 74.50
SCNpilot_expt_1000_bf_scaffold_20968
Class: Alphaproteobacteria (87.5%)
8 7365 bp 60.87 5.53 88.55
SCNpilot_expt_1000_bf_scaffold_8847
Class: Alphaproteobacteria (55.56%)
9 5286 bp 58.29 5.53 74.40
SCNpilot_expt_1000_bf_scaffold_3796
Class: Alphaproteobacteria (87.5%)
16 10638 bp 60.74 5.52 89.26
SCNpilot_expt_1000_bf_scaffold_8497
Species: alpha proteobacterium U9-1i (50%)
6 7051 bp 59.67 5.50 86.88
SCNpilot_expt_1000_bf_scaffold_24535
Order: Rhizobiales (60%)
5 5595 bp 58.53 5.50 55.17
SCNpilot_expt_1000_bf_scaffold_18561
Species: Mesorhizobium sp. STM 4661 (50%)
2 2232 bp 57.17 5.49 99.60
SCNpilot_expt_1000_bf_scaffold_7600
Class: Alphaproteobacteria (82.35%)
17 10678 bp 60.81 5.48 92.94
SCNpilot_expt_1000_bf_scaffold_9799
Class: Alphaproteobacteria (60%)
10 8346 bp 61.75 5.48 88.75
SCNpilot_expt_1000_bf_scaffold_24044
Class: Alphaproteobacteria (50%)
12 9047 bp 57.39 5.47 74.05
SCNpilot_expt_1000_bf_scaffold_8414
Class: Alphaproteobacteria (83.33%)
6 5123 bp 61.47 5.47 92.47
SCNpilot_expt_1000_bf_scaffold_19648
Class: Alphaproteobacteria (66.67%)
3 2662 bp 61.12 5.45 73.70
SCNpilot_expt_1000_bf_scaffold_18690
Order: Caulobacterales (50%)
4 3529 bp 60.78 5.45 83.99
SCNpilot_expt_1000_bf_scaffold_13387
Class: Alphaproteobacteria (91.67%)
12 10158 bp 55.38 5.41 72.56
Displaying items 251-300 of 400 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.