ggKbase home page

SCNpilot_expt_1000_bf_scaffold_11916

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11916_1
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..2594)
DNA (2592bp) protein (864aa)
ABC transporter n=1 Tax=Amycolatopsis methanolica RepID=UPI00037B7ADC
Excinuclease subunit A {ECO:0000313|EMBL:AIJ23577.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
UvrA-like protein
SCNpilot_expt_1000_bf_scaffold_11916_2
Amycolatopsis halophila, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2604..2978)
DNA (375bp) protein (125aa)
Putative araC-like transcription regulator n=1 Tax=Nocardia cyriacigeorgica (strain GUH-2) RepID=H6R7X7_NOCCG
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:ETA66463.1}; TaxID=592678 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis halophila YIM 93223.;"
putative araC-like transcription regulator
SCNpilot_expt_1000_bf_scaffold_11916_3
unknown

Not on your lists

comp(3078..3281)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11916_4
Arthrobacter phenanthrenivorans, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3403..3825
DNA (423bp) protein (141aa)
CBS domain-containing protein n=1 Tax=Arthrobacter phenanthrenivorans (strain DSM 18606 / JCM 16027 / LMG 23796 / Sphe3) RepID=F0M369_ARTPP
hypothetical protein
CBS domain-containing protein {ECO:0000313|EMBL:ADX73290.1}; TaxID=930171 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter phenanthrenivorans (strain DSM 18606 / JCM 16027 / LMG; 23796 / Sphe3).;"
SCNpilot_expt_1000_bf_scaffold_11916_5
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(3883..4842)
DNA (960bp) protein (320aa)
DNA primase-like; K01971 DNA ligase (ATP) [EC:6.5.1.1] rbh
DNA primase-like protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IMN6_KORVE rbh
DNA primase-like protein {ECO:0000313|EMBL:ABF41864.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
SCNpilot_expt_1000_bf_scaffold_11916_6
Saccharomonospora marina, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4839..5507)
DNA (669bp) protein (223aa)
DNA polymerase LigD, ligase domain-containing protein; K01971 DNA ligase (ATP) [EC:6.5.1.1]
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI0003685BFF
DNA ligase D/DNA polymerase LigD {ECO:0000313|EMBL:EHR53049.1}; TaxID=882083 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora marina XMU15.;"
SCNpilot_expt_1000_bf_scaffold_11916_7
unknown

Not on your lists

comp(5507..5743)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11916_8
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

5804..6577
DNA (774bp) protein (258aa)
DNA repair protein n=1 Tax=Patulibacter americanus RepID=UPI0003B5797F
Ku protein; K10979 DNA end-binding protein Ku
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_expt_1000_bf_scaffold_11916_9
Amycolatopsis japonica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6583..7497
DNA (915bp) protein (305aa)
DNA repair protein n=1 Tax=Patulibacter americanus RepID=UPI0003B72053
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=208439 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis japonica.;"
DNA end-binding protein Ku
SCNpilot_expt_1000_bf_scaffold_11916_10

Not on your lists

7586..8146
DNA (561bp) protein (187aa)
peptidase C56, PfpI; K05520 protease I [EC:3.2.-.-]
glutamine amidotransferase n=1 Tax=Actinoalloteichus spitiensis RepID=UPI000369BFF8
Intracellular protease {ECO:0000313|EMBL:AEE65509.1}; TaxID=1037453 species="Bacteria; environmental samples.;" source="uncultured bacterium BAC AB649/1850.;"
SCNpilot_expt_1000_bf_scaffold_11916_11
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8180..8404)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Frankia alni (strain ACN14a) RepID=Q0RQ16_FRAAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ60361.1}; TaxID=326424 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
Displaying 11 items

View Taxonomy