ggKbase home page

SCNpilot_expt_1000_bf_scaffold_6064

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6064_1
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..677
DNA (675bp) protein (225aa)
Hypothetical membrane protein n=1 Tax=Rhodococcus opacus (strain B4) RepID=C1AZJ1_RHOOB
Putative membrane protein {ECO:0000313|EMBL:EXG79830.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6064_2
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

688..1053
DNA (366bp) protein (122aa)
translation initiation factor SUI1 n=1 Tax=Patulibacter americanus RepID=UPI0003B779D5
Translation initiation factor SUI1-related protein {ECO:0000313|EMBL:EHN12430.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
translation initiation factor SUI1; K03113 translation initiation factor 1
SCNpilot_expt_1000_bf_scaffold_6064_3

Not on your lists

comp(1150..1788)
DNA (639bp) protein (213aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN04006.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_1000_bf_scaffold_6064_4
Rhodococcus triatomae, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1891..2847)
DNA (957bp) protein (319aa)
nucleotide-sugar epimerase (EC:5.1.3.-); K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
Nucleotide-sugar epimerase n=1 Tax=Rhodococcus triatomae BKS 15-14 RepID=M2XBK1_9NOCA rbh
Nucleotide-sugar epimerase {ECO:0000313|EMBL:EME21028.1}; TaxID=1278078 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus triatomae BKS 15-14.;"
SCNpilot_expt_1000_bf_scaffold_6064_5
Rhodococcus qingshengii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2917..3891)
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Rhodococcus qingshengii BKS 20-40 RepID=M2UVG4_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:EME14306.1}; TaxID=1278077 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus qingshengii BKS 20-40.;"
hypothetical protein; K03453 bile acid:Na+ symporter, BASS family
SCNpilot_expt_1000_bf_scaffold_6064_6
Rhodococcus erythropolis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3908..5242)
DNA (1335bp) protein (445aa)
monooxygenase n=1 Tax=Rhodococcus erythropolis RepID=UPI0002FFA2AF
flavin-containing monooxygenase
Flavin-containing monooxygenase {ECO:0000313|EMBL:AGT92884.1}; TaxID=1136179 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus erythropolis CCM2595.;"
SCNpilot_expt_1000_bf_scaffold_6064_7
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

5368..6504
DNA (1137bp) protein (379aa)
Uncharacterized protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F366_CONWI rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADB50346.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_expt_1000_bf_scaffold_6064_8

Not on your lists

6588..7142
DNA (555bp) protein (185aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK78110.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ATP/cobalamin adenosyltransferase id=14625390 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
ATP/cobalamin adenosyltransferase
SCNpilot_expt_1000_bf_scaffold_6064_9
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

7178..7978
DNA (801bp) protein (267aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FAU5_CONWI
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADB51258.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_expt_1000_bf_scaffold_6064_10
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(7975..8511)
DNA (537bp) protein (179aa)
adenine phosphoribosyltransferase; K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Adenine phosphoribosyltransferase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZE2_CONWI
SCNpilot_expt_1000_bf_scaffold_6064_11
unknown

Not on your lists

comp(8520..8942)
DNA (423bp) protein (141aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6064_12
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

8985..9554
DNA (570bp) protein (190aa)
Putative nudix hydrolase YeaB n=1 Tax=Patulibacter medicamentivorans RepID=H0E8I2_9ACTN
Putative nudix hydrolase YeaB {ECO:0000313|EMBL:EHN09982.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
NUDIX hydrolase
SCNpilot_expt_1000_bf_scaffold_6064_13
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

9576..10379
DNA (804bp) protein (268aa)
class IV aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42]
Aminotransferase class IV n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F3U3_CONWI
Aminotransferase class IV {ECO:0000313|EMBL:ADB54318.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
SCNpilot_expt_1000_bf_scaffold_6064_14
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(10469..11413)
DNA (945bp) protein (315aa)
thioredoxin reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] rbh
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Thioredoxin reductase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F360_CONWI rbh
SCNpilot_expt_1000_bf_scaffold_6064_15
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(11476..12006)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F359_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB50339.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Displaying 15 items

View Taxonomy