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SCNPILOT_CONT_300_BF_Rhizobiales_61_16

SCNPILOT_EXPT_1000_BF_Rhizobiales_61_5
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_1000_bf_UNK

Properties

Avg. coverage: 4.77 Longest contig: 25.11 Kbp Bin length: 4.64 Mbp GC content: 60.72 %
Contigs count: 913 Features count: 5488 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 31 / 55 MC: 2 BSCG 31 / 51 MC: 5 ASCG 8 / 38 MC: 2
Displaying items 351-400 of 913 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_7652
Order: Rhizobiales (83.33%)
6 7100 bp 61.56 4.89 87.30
SCNpilot_expt_1000_bf_scaffold_7143
Phylum: Proteobacteria (83.33%)
6 5355 bp 61.98 4.76 92.55
SCNpilot_expt_1000_bf_scaffold_15361
Domain: Bacteria (83.33%)
6 5098 bp 62.71 5.49 87.45
SCNpilot_expt_1000_bf_scaffold_14803
Order: Rhizobiales (50%)
6 4908 bp 60.29 4.94 85.70
SCNpilot_expt_1000_bf_scaffold_11941
Order: Burkholderiales (66.67%)
6 4262 bp 55.19 3.99 79.26
SCNpilot_expt_1000_bf_scaffold_7157
Order: Rhizobiales (83.33%)
6 4746 bp 64.41 4.42 90.01
SCNpilot_expt_1000_bf_scaffold_9991
Order: Rhizobiales (83.33%)
6 3694 bp 62.24 5.14 91.53
SCNpilot_expt_1000_bf_scaffold_14552
Order: Rhizobiales (100%)
6 3194 bp 62.27 5.09 94.11
SCNpilot_expt_1000_bf_scaffold_6452
Phylum: Proteobacteria (50%)
6 5670 bp 60.71 5.60 92.59
SCNpilot_expt_1000_bf_scaffold_21244
Order: Rhizobiales (50%)
6 3990 bp 60.15 5.01 79.02
SCNpilot_expt_1000_bf_scaffold_27692
Order: Rhizobiales (83.33%)
6 4075 bp 59.53 4.97 86.58
SCNpilot_expt_1000_bf_scaffold_11450
Class: Alphaproteobacteria (50%)
6 3629 bp 58.72 5.51 76.05
SCNpilot_expt_1000_bf_scaffold_9756
Genus: Mesorhizobium (50%)
6 5162 bp 61.72 4.65 82.64
SCNpilot_expt_1000_bf_scaffold_28824
Domain: Bacteria (50%)
6 3354 bp 55.52 3.80 68.87
SCNpilot_expt_1000_bf_scaffold_5018 6 6152 bp 62.04 4.39 92.99
SCNpilot_expt_1000_bf_scaffold_15650
Order: Rhizobiales (83.33%)
6 5713 bp 62.49 4.33 82.08
SCNpilot_expt_1000_bf_scaffold_17052
Order: Rhizobiales (50%)
6 4654 bp 60.01 6.23 77.42
SCNpilot_expt_1000_bf_scaffold_18560
Order: Rhizobiales (83.33%)
6 5501 bp 62.44 4.45 91.46
SCNpilot_expt_1000_bf_scaffold_12289
Order: Rhizobiales (50%)
6 4722 bp 60.95 5.82 76.43
SCNpilot_expt_1000_bf_scaffold_7709
Class: Alphaproteobacteria (50%)
6 5897 bp 56.33 4.37 69.34
SCNpilot_expt_1000_bf_scaffold_11216
Order: Rhizobiales (66.67%)
6 4848 bp 61.16 4.80 81.13
SCNpilot_expt_1000_bf_scaffold_21017
Phylum: Proteobacteria (50%)
6 4382 bp 59.81 5.08 82.36
SCNpilot_expt_1000_bf_scaffold_12557
Order: Rhizobiales (83.33%)
6 4912 bp 64.17 4.53 93.02
SCNpilot_expt_1000_bf_scaffold_6742
Class: Alphaproteobacteria (50%)
6 4968 bp 61.25 5.23 93.00
SCNpilot_expt_1000_bf_scaffold_8154
Phylum: Proteobacteria (50%)
6 6905 bp 57.97 4.06 67.47
SCNpilot_expt_1000_bf_scaffold_19298
Order: Rhizobiales (50%)
6 4952 bp 61.55 4.75 91.42
SCNpilot_expt_1000_bf_scaffold_9278
Order: Rhizobiales (66.67%)
6 5919 bp 60.67 4.60 75.93
SCNpilot_expt_1000_bf_scaffold_7217
Order: Rhizobiales (100%)
6 4719 bp 62.41 4.29 86.01
SCNpilot_expt_1000_bf_scaffold_6244
Order: Rhizobiales (50%)
6 5846 bp 56.14 4.40 77.85
SCNpilot_expt_1000_bf_scaffold_8678
Class: Alphaproteobacteria (50%)
6 6410 bp 61.15 5.58 85.79
SCNpilot_expt_1000_bf_scaffold_4972
Species: Methylocella silvestris (83.33%)
6 9720 bp 62.65 5.20 85.40
SCNpilot_expt_1000_bf_scaffold_20141
Species: Advenella kashmirensis (83.33%)
6 4063 bp 61.90 4.43 93.92
SCNpilot_expt_1000_bf_scaffold_19080
Phylum: Proteobacteria (66.67%)
6 4693 bp 57.81 5.49 85.15
SCNpilot_expt_1000_bf_scaffold_14385 6 4701 bp 55.18 4.52 83.54
SCNpilot_expt_1000_bf_scaffold_12090
Genus: Bradyrhizobium (83.33%)
6 6556 bp 59.41 5.26 81.22
SCNpilot_expt_1000_bf_scaffold_16794
Species: Methylobacterium extorquens (50%)
6 6779 bp 63.09 4.43 91.12
SCNpilot_expt_1000_bf_scaffold_26181
Order: Rhizobiales (66.67%)
6 4056 bp 59.84 3.21 67.90
SCNpilot_expt_1000_bf_scaffold_10246
Class: Alphaproteobacteria (50%)
6 5162 bp 63.12 4.89 95.14
SCNpilot_expt_1000_bf_scaffold_15976
Class: Betaproteobacteria (50%)
6 4793 bp 59.48 5.48 81.49
SCNpilot_expt_1000_bf_scaffold_10510
Genus: Methylobacterium (50%)
6 4915 bp 63.91 4.53 96.44
SCNpilot_expt_1000_bf_scaffold_12614
Order: Rhizobiales (50%)
6 5242 bp 61.54 5.68 88.94
SCNpilot_expt_1000_bf_scaffold_5096
Order: Rhizobiales (83.33%)
6 6085 bp 62.07 4.11 79.72
SCNpilot_expt_1000_bf_scaffold_17642
Order: Rhizobiales (60%)
5 4513 bp 63.84 4.60 87.48
SCNpilot_expt_1000_bf_scaffold_4755
Order: Rhizobiales (80%)
5 6377 bp 58.60 5.17 90.47
SCNpilot_expt_1000_bf_scaffold_19099
Order: Rhizobiales (80%)
5 3233 bp 57.78 4.25 83.88
SCNpilot_expt_1000_bf_scaffold_11800 5 5768 bp 61.91 4.77 78.07
SCNpilot_expt_1000_bf_scaffold_8476
Species: Roseobacter denitrificans (60%)
5 4654 bp 62.51 4.57 95.60
SCNpilot_expt_1000_bf_scaffold_18392 5 5239 bp 59.99 3.44 99.69
SCNpilot_expt_1000_bf_scaffold_18138
Class: Alphaproteobacteria (60%)
5 2278 bp 57.24 4.39 80.47
SCNpilot_expt_1000_bf_scaffold_25587
Order: Rhizobiales (80%)
5 2977 bp 59.19 4.79 87.77
Displaying items 351-400 of 913 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.