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SCNpilot_expt_300_bf_scaffold_1118

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1118_1
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..877)
DNA (876bp) protein (292aa)
fatty-acyl-CoA synthase (EC:6.2.1.-)
Fatty-acyl-CoA synthase {ECO:0000313|EMBL:CCA90596.1}; EC=6.2.1.- {ECO:0000313|EMBL:CCA90596.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadace
Fatty-acyl-CoA synthase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IE71_9SPHN
SCNpilot_expt_300_bf_scaffold_1118_2
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(874..2277)
DNA (1404bp) protein (468aa)
Aldehyde dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P1_NOVAD rbh
aldehyde dehydrogenase
Aldehyde dehydrogenase {ECO:0000313|EMBL:ABD26132.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
SCNpilot_expt_300_bf_scaffold_1118_3
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2298..3785)
DNA (1488bp) protein (496aa)
TonB-dependent receptor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P2_NOVAD rbh
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ABD26131.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" s
SCNpilot_expt_300_bf_scaffold_1118_4
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3782..4519)
DNA (738bp) protein (246aa)
TonB-dependent receptor n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IE73_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:KHS46723.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobi
TonB-dependent receptor
SCNpilot_expt_300_bf_scaffold_1118_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4535..4825)
DNA (291bp) protein (97aa)
Cytochrome c, class I n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P3_NOVAD
Cytochrome c in methylamine utilization cluster {ECO:0000313|EMBL:GAO57025.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobiu
cytochrome c, class I
SCNpilot_expt_300_bf_scaffold_1118_6
unknown

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comp(4798..4953)
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1118_7
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4950..5399)
DNA (450bp) protein (150aa)
Cytochrome c, class I n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P4_NOVAD
cytochrome c, class I
Cytochrome c, class I {ECO:0000313|EMBL:ABD26129.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sou
SCNpilot_expt_300_bf_scaffold_1118_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5396..5944)
DNA (549bp) protein (183aa)
Methylamine dehydrogenase light chain {ECO:0000313|EMBL:GAO57023.1}; EC=1.4.9.1 {ECO:0000313|EMBL:GAO57023.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
amine dehydrogenase (EC:1.4.99.3)
Amine dehydrogenase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z5K2_9SPHN rbh
SCNpilot_expt_300_bf_scaffold_1118_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5948..6538)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P6_NOVAD rbh
Methylamine utilization protein mauD {ECO:0000313|EMBL:GAO57022.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1118_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6538..7035)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P7_NOVAD
Methylamine utilization protein mauE {ECO:0000313|EMBL:GAO57021.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1118_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7032..8213)
DNA (1182bp) protein (394aa)
Methylamine dehydrogenase heavy chain {ECO:0000313|EMBL:GAO57020.1}; EC=1.4.9.1 {ECO:0000313|EMBL:GAO57020.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
amine dehydrogenase (EC:1.4.99.3)
Amine dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P8_NOVAD rbh
SCNpilot_expt_300_bf_scaffold_1118_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8339..9025
DNA (687bp) protein (229aa)
Transcriptional regulator, TetR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P9_NOVAD
Transcriptional regulator of tetR family {ECO:0000313|EMBL:GAO57019.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" so
TetR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_1118_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9035..10654)
DNA (1620bp) protein (540aa)
Acyl-CoA dehydrogenase (EC:1.3.99.3) rbh
Acyl-CoA dehydrogenase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W1R7_9SPHN rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ENY81427.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp
SCNpilot_expt_300_bf_scaffold_1118_14
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10781..11446
DNA (666bp) protein (222aa)
NAD(P)H dehydrogenase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002883632
Putative NAD(P)H dehydrogenase {ECO:0000313|EMBL:GAM01386.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingo
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1118_15
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11522..12691
DNA (1170bp) protein (390aa)
Kynurenine--oxoglutarate transaminase {ECO:0000313|EMBL:KFG90237.1}; EC=2.6.1.7 {ECO:0000313|EMBL:KFG90237.1};; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
kynurenine--oxoglutarate transaminase (EC:2.6.1.7)
aminotransferase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6164C rbh
SCNpilot_expt_300_bf_scaffold_1118_16
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12683..12901)
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000381A8FB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZP56952.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
SCNpilot_expt_300_bf_scaffold_1118_17
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12971..14371)
DNA (1401bp) protein (467aa)
transporter n=1 Tax=Sphingomonas melonis RepID=UPI00037CB3B5 rbh
Sphingomonas taxi strain 30a NODE_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27058.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
oprM2; Outer membrane protein OprM
SCNpilot_expt_300_bf_scaffold_1118_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14395..17451)
DNA (3057bp) protein (1019aa)
multidrug transporter n=1 Tax=Sphingomonas melonis RepID=UPI0003807788 rbh
Sphingomonas taxi strain 30a NODE_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27059.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
multidrug transporter
SCNpilot_expt_300_bf_scaffold_1118_19
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17493..18614)
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003738F0D rbh
hemolysin D
Hemolysin D {ECO:0000313|EMBL:AIT08189.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_300_bf_scaffold_1118_20
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18708..19442
DNA (735bp) protein (245aa)
Transcriptional regulator n=1 Tax=Novosphingobium sp. AP12 RepID=J2HHD0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHL25882.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter me
hypothetical protein
SCNpilot_expt_300_bf_scaffold_1118_21
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19550..20206
DNA (657bp) protein (219aa)
TonB-dependent receptor n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I8TA56_9GAMM
TonB-dependent receptor {ECO:0000313|EMBL:KGB55146.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis s
TonB-dependent receptor plug
Displaying 21 items

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