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SCNpilot_expt_300_bf_scaffold_1320

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1320_1
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(93..1226)
DNA (1134bp) protein (378aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036E77A9 rbh
peptidase
SCNpilot_expt_300_bf_scaffold_1320_2
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1223..1828)
DNA (606bp) protein (202aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:00002
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031C8329
1-deoxy-D-xylulose 5-phosphate reductoisomerase
SCNpilot_expt_300_bf_scaffold_1320_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1929..2333)
DNA (405bp) protein (135aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:00002
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037766E1
1-deoxy-D-xylulose 5-phosphate reductoisomerase
SCNpilot_expt_300_bf_scaffold_1320_4
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2330..3121)
DNA (792bp) protein (264aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales;
phosphatidate cytidylyltransferase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002884348 rbh
phosphatidate cytidylyltransferase
SCNpilot_expt_300_bf_scaffold_1320_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3118..3849)
DNA (732bp) protein (244aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingom
UDP pyrophosphate synthase n=2 Tax=Sphingomonas melonis RepID=UPI00036AC617 rbh
UDP pyrophosphate synthase
SCNpilot_expt_300_bf_scaffold_1320_6
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3887..4444)
DNA (558bp) protein (186aa)
ribosome recycling factor n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B33BE8 rbh
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1219050 species="Bacteria;
ribosome-recycling factor
SCNpilot_expt_300_bf_scaffold_1320_7
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4444..5175)
DNA (732bp) protein (244aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197
pyrH; uridylate kinase (EC:2.7.4.22)
uridylate kinase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036B096E rbh
SCNpilot_expt_300_bf_scaffold_1320_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5377..6324)
DNA (948bp) protein (316aa)
Elongation factor Ts n=1 Tax=Sphingomonas sp. S17 RepID=F3WVM8_9SPHN rbh
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacte
elongation factor Ts
SCNpilot_expt_300_bf_scaffold_1320_9
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6421..7221)
DNA (801bp) protein (267aa)
30S ribosomal protein S2 n=1 Tax=Sphingomonas sp. S17 RepID=F3WVM7_9SPHN rbh
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomo
30S ribosomal protein S2
SCNpilot_expt_300_bf_scaffold_1320_10
unknown

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7474..7707
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_1320_11
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7649..8443)
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003695CEA rbh
Sphingomonas taxi strain 30a NODE_1, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29227.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadac
CDP-diacylglycerol O-phosphatidyltransferase
SCNpilot_expt_300_bf_scaffold_1320_12
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8725..9129)
DNA (405bp) protein (135aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00093350};; TaxID=121905
phosphatidylserine decarboxylase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B70800
phosphatidylserine decarboxylase
SCNpilot_expt_300_bf_scaffold_1320_13
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9272..10168
DNA (897bp) protein (299aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; S
isocitrate dehydrogenase (EC:1.1.1.42)
isocitrate dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003628069
Displaying 13 items

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