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SCNpilot_expt_300_bf_scaffold_893

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_893_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1333)
DNA (1332bp) protein (444aa)
PutA protein {ECO:0000313|EMBL:KIU29581.1}; EC=1.2.1.88 {ECO:0000313|EMBL:KIU29581.1};; EC=1.5.5.2 {ECO:0000313|EMBL:KIU29581.1};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria;
putA; transcriptional regulator (EC:1.2.1.88 1.5.5.2)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037C7D91
SCNpilot_expt_300_bf_scaffold_893_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1428..1901
DNA (474bp) protein (158aa)
ArsR family transcriptional regulator n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6473C
Sphingomonas taxi strain 30a NODE_15, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29580.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
Lrp/AsnC-family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_893_3
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2112..2432)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B45F4C
Uncharacterized protein {ECO:0000313|EMBL:GAM02222.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas p
hypothetical protein
SCNpilot_expt_300_bf_scaffold_893_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2533..3858
DNA (1326bp) protein (442aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyru
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036AD0D5
3-phosphoshikimate 1-carboxyvinyltransferase
SCNpilot_expt_300_bf_scaffold_893_5
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3849..4853
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6B1FA rbh
putative S33 family peptidase
Putative S33 family peptidase {ECO:0000313|EMBL:AGH50849.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomo
SCNpilot_expt_300_bf_scaffold_893_6
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4850..5491
DNA (642bp) protein (214aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:
cytidylate kinase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035E0BD2 rbh
cytidylate kinase
SCNpilot_expt_300_bf_scaffold_893_7
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5768..6742
DNA (975bp) protein (325aa)
30S ribosomal protein S1 n=1 Tax=Sphingomonas sp. S17 RepID=F3WZK0_9SPHN
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomona
30S ribosomal protein S1
SCNpilot_expt_300_bf_scaffold_893_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6723..7421
DNA (699bp) protein (233aa)
30S ribosomal protein S1 n=1 Tax=Sphingomonas sp. S17 RepID=F3WZK0_9SPHN
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomona
30S ribosomal protein S1
SCNpilot_expt_300_bf_scaffold_893_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7582..7863
DNA (282bp) protein (94aa)
DNA-binding protein n=1 Tax=Sphingomonas melonis RepID=UPI0003661366
integration host factor subunit beta
Integration host factor subunit beta {ECO:0000313|EMBL:AIT06734.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="S
SCNpilot_expt_300_bf_scaffold_893_10
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7898..9427
DNA (1530bp) protein (510aa)
ABC transporter substrate-binding protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B2F50F rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KHA65637.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" sourc
ABC transporter substrate-binding protein
SCNpilot_expt_300_bf_scaffold_893_11
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9434..9856
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3C312
Uncharacterized protein {ECO:0000313|EMBL:KHA65605.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp
hypothetical protein
SCNpilot_expt_300_bf_scaffold_893_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9863..11059)
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037D5337 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP71833.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
SCNpilot_expt_300_bf_scaffold_893_13
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11056..11574)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000379B4C8
Uncharacterized protein {ECO:0000313|EMBL:AKH41560.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Alterer
hypothetical protein
SCNpilot_expt_300_bf_scaffold_893_14
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11629..12960
DNA (1332bp) protein (444aa)
ribosomal protein S12 methylthiotransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B7685A rbh
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase
ribosomal protein S12 methylthiotransferase
SCNpilot_expt_300_bf_scaffold_893_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13108..13611)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6E858
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP72297.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
SCNpilot_expt_300_bf_scaffold_893_16
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13608..15512)
DNA (1905bp) protein (635aa)
potassium transporter Kup n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B45D19 rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomon
K+ potassium transporter
SCNpilot_expt_300_bf_scaffold_893_17
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15611..16258)
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00038178D3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIT05685.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas t
SCNpilot_expt_300_bf_scaffold_893_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16255..16479)
DNA (225bp) protein (75aa)
cytochrome C biogenesis protein CcmC n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC43C
cytochrome C biogenesis protein CcmE
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959};
SCNpilot_expt_300_bf_scaffold_893_19
unknown

Not on your lists

comp(16667..16771)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_300_bf_scaffold_893_20
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16768..17493)
DNA (726bp) protein (242aa)
transcriptional regulator n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B69925 rbh
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29155.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
heme ABC transporter permease
SCNpilot_expt_300_bf_scaffold_893_21
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17661..18701
DNA (1041bp) protein (347aa)
Acyl-CoA dehydrogenases n=1 Tax=uncultured gamma proteobacterium EB000_65A11 RepID=E0Y010_9GAMM rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ETR76551.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
acyl-CoA dehydrogenase
SCNpilot_expt_300_bf_scaffold_893_22
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18698..19885
DNA (1188bp) protein (396aa)
Acyl-CoA dehydrogenases n=1 Tax=uncultured gamma proteobacterium EB000_65A11 RepID=E0Y009_9GAMM rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ETR76550.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
acyl-CoA dehydrogenase domain-containing protein
SCNpilot_expt_300_bf_scaffold_893_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19889..20356)
DNA (468bp) protein (156aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) l
Endonuclease III n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9W9_9SPHN
endonuclease III
SCNpilot_expt_300_bf_scaffold_893_24
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20369..20545)
DNA (177bp) protein (59aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) l
Endonuclease III n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W9W9_9SPHN
endonuclease III
SCNpilot_expt_300_bf_scaffold_893_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20542..21270)
DNA (729bp) protein (243aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rul
dihydrodipicolinate reductase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035E50C1 rbh
4-hydroxy-tetrahydrodipicolinate reductase rbh
SCNpilot_expt_300_bf_scaffold_893_26
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21785..22360
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003748D69
agmatine deiminase
Sphingomonas taxi strain 30a NODE_64, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26779.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
SCNpilot_expt_300_bf_scaffold_893_27
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23009..24280)
DNA (1272bp) protein (424aa)
ATP-dependent protease n=1 Tax=Sphingomonas melonis RepID=UPI00035F3EE8 rbh
Clp protease ATP-binding protein rbh
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonad
SCNpilot_expt_300_bf_scaffold_893_28
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24407..25096)
DNA (690bp) protein (230aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-R
clpP; Clp protease (EC:3.4.21.92) rbh
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B50CA6 rbh
SCNpilot_expt_300_bf_scaffold_893_29
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25151..26110)
DNA (960bp) protein (320aa)
RfbJ protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000371DDB5 rbh
Glycosyl transferase family protein {ECO:0000313|EMBL:KHA64401.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sph
glycosyl transferase family protein
SCNpilot_expt_300_bf_scaffold_893_30
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26219..27853)
DNA (1635bp) protein (545aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-R
trigger factor n=1 Tax=Sphingomonas melonis RepID=UPI000365F834 rbh
trigger factor rbh
Displaying items 1-30 of 38 in total

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