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SCNpilot_expt_300_bf_scaffold_1150_7

Organism: SCNPILOT_EXPT_300_BF_Thiobacillus_62_448

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 MC: 1 ASCG 13 / 38 MC: 1
Location: comp(3879..5312)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase factor sigma-54 (EC:2.7.7.6); K03092 RNA polymerase sigma-54 factor Tax=GWE1_Thiobacillus_62_9_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 93.3
  • Coverage: 477.0
  • Bit_score: 874
  • Evalue 6.70e-251
RNA polymerase factor sigma-54 (EC:2.7.7.6) similarity KEGG
DB: KEGG
  • Identity: 89.3
  • Coverage: 478.0
  • Bit_score: 836
  • Evalue 5.30e-240
RNA polymerase subunit sigma-54 n=1 Tax=Thiobacillus thioparus RepID=UPI0003749A25 similarity UNIREF
DB: UNIREF100
  • Identity: 97.9
  • Coverage: 477.0
  • Bit_score: 909
  • Evalue 1.00e-261
  • rbh

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Taxonomy

GWE1_Thiobacillus_62_9_curated → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1434
ATGAAACACAGCCTTCAACTCAAGCTCGGTCAACACCTCACGCTGACGCCCCAACTGCAACAGTCGATTCGACTGCTGCAGCTGTCGACGCTGGAACTGAATCAGGAACTGGAGCAGATGCTGCAGGACAATCCCCTGCTGGAACGCGAGGAGGAGGACGAAGCCAGCTATGCGACAGCGGAGGCGCCCGCACATACAGCCGAGGCCGAGGCGCAAAGCACAGAAACGGCATTGCCCGACCATACCGACTCGGAACCTGTCACCGCACTGGATGACTCCGACTGGAACGACTACAGCGTGGCCAGCGGCGATGACGAGGACAACGATTACACCCAAGGCTCGATATCGGGTGCGACCCTGCGCGAACATCTGCTGAACCAGTTGATCGTCAGTCCGCTCACCCTGCGCGACCGCACCCTGGTCGCCGCGCTGATCGACGACCTGGACGATTCGGGTTTCCTGACCCAGCCGCTGGAAGACATCACCGCGAGCCTCCAGGCCGAACTCGAGGAGCTCGAACCCGAGGAACTGGAAACCGCGCTCAAGCACCTGCAGAACATGGACCCAACCGGTGTCGGCGCACGCAACCTGGCCGAATGCCTGACCCTGCAACTGCGCGCCCTGCCGCCGGACACGCCCGCGCGCGACGCCGCCATGCGGCTCACCGCACACTATCTGGATCTGCTCGCCGCACGCGATGTCGGCAAGCTGAAGAAAATGCTCGGCATCGACGACGCCACGCTGCGCGCCGCACGTGCCCTGATCCTGTCCCTGAACCCGCGCCCGGGCGCCGCTTTCGGCGCCGACGACACGCACTACGTGATTCCCGACGTCTACGTGCGCAAGGTCAAGGGCATGTGGATCGCCAGCCTCAACGCCGACGCCATGCCCAAGCTGCGCGTCAACCGCGTCTATGCCGACATCCTGGCACGCCACCGCGAAAGCGGCGGCAGCCAGCTCGCCAGCCAGCTGCAGGAAGCACGCTGGCTGATCAAGAACGTGCAGCAGCGTTTCGACACCATCCTGCGCGTCTCGCAGGCCATCGTCGACCGCCAGAAACAGTTCTTCGAGCACGGCGAAGTAGCGATGCGCCCGCTGGTATTGCGCGAAATCGCCGATGCAGTGGAGCTGCACGAATCGACCATTTCGCGCGTGACTACGCAAAAATACATGATGACGCCGCGCGGCTTGTACGAGCTGAAGTATTTCTTCGGCAGCCACGTCTCGACCGACAGTGGCGGCGCCTGTTCCTCGACCGCCATTCGTGCCCTCATCAAGCAGCTGGTTGCCGCCGAAAGTGCCAAGAAACCGCTGTCGGATGGCCAATTGGCGGAAGTTCTAGGCCAGCAGGGTATCGTGGTAGCCCGCCGCACGGTCGCCAAGTATCGCGAATCGCTGCAAATCCCACCCGCCAACATGCGCCGCGCACTTTGA
PROTEIN sequence
Length: 478
MKHSLQLKLGQHLTLTPQLQQSIRLLQLSTLELNQELEQMLQDNPLLEREEEDEASYATAEAPAHTAEAEAQSTETALPDHTDSEPVTALDDSDWNDYSVASGDDEDNDYTQGSISGATLREHLLNQLIVSPLTLRDRTLVAALIDDLDDSGFLTQPLEDITASLQAELEELEPEELETALKHLQNMDPTGVGARNLAECLTLQLRALPPDTPARDAAMRLTAHYLDLLAARDVGKLKKMLGIDDATLRAARALILSLNPRPGAAFGADDTHYVIPDVYVRKVKGMWIASLNADAMPKLRVNRVYADILARHRESGGSQLASQLQEARWLIKNVQQRFDTILRVSQAIVDRQKQFFEHGEVAMRPLVLREIADAVELHESTISRVTTQKYMMTPRGLYELKYFFGSHVSTDSGGACSSTAIRALIKQLVAAESAKKPLSDGQLAEVLGQQGIVVARRTVAKYRESLQIPPANMRRAL*