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SCNpilot_expt_300_bf_scaffold_1112

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1112_1
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..369
DNA (369bp) protein (123aa)
narG1; nitrate reductase subunit alpha (EC:1.7.99.4)
Nitrate reductase A subunit alpha n=1 Tax=Advenella kashmirensis W13003 RepID=V8QWF0_9BURK
Nitrate reductase A subunit alpha {ECO:0000313|EMBL:ETF03339.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis
SCNpilot_expt_300_bf_scaffold_1112_2
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

386..1930
DNA (1545bp) protein (515aa)
narH1; nitrate reductase subunit beta (EC:1.7.99.4)
Nitrate reductase beta chain {ECO:0000313|EMBL:CAP44171.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CAP44171.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenac
Nitrate reductase beta chain n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I3G4_BORPD rbh
SCNpilot_expt_300_bf_scaffold_1112_3
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1927..2595
DNA (669bp) protein (223aa)
narJ1; nitrate reductase subunit delta (EC:1.7.99.4)
Nitrate reductase delta chain {ECO:0000313|EMBL:CAP44170.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CAP44170.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligena
Nitrate reductase delta chain n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I3G2_BORPD rbh
SCNpilot_expt_300_bf_scaffold_1112_4
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2588..3277
DNA (690bp) protein (230aa)
narI1; nitrate reductase gamma chain (EC:1.7.99.4)
Nitrate reductase gamma chain {ECO:0000313|EMBL:CAP44169.1}; EC=1.7.99.4 {ECO:0000313|EMBL:CAP44169.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligena
Nitrate reductase gamma chain n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I3G0_BORPD rbh
SCNpilot_expt_300_bf_scaffold_1112_5
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3287..4030
DNA (744bp) protein (248aa)
peptidyl-prolyl cis-trans isomerase domain-containing protein (EC:5.2.1.8)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148, ECO:0000313|EMBL:CAP44168.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria;
PPIC-type PPIASE domain protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I3F7_BORPD rbh
SCNpilot_expt_300_bf_scaffold_1112_6
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4087..5337
DNA (1251bp) protein (417aa)
Putative nitrite extrusion protein n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I3F5_BORPD rbh
nitrite extrusion protein
Putative nitrite extrusion protein {ECO:0000313|EMBL:CAP44167.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella
SCNpilot_expt_300_bf_scaffold_1112_7
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5351..6412)
DNA (1062bp) protein (354aa)
Vanillate monooxygenase {ECO:0000313|EMBL:EED66666.1}; EC=1.14.13.82 {ECO:0000313|EMBL:EED66666.1};; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae
Vanillate monooxygenase n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X3I5_COMTE
Rieske (2Fe-2S) protein
SCNpilot_expt_300_bf_scaffold_1112_8
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6519..6896)
DNA (378bp) protein (126aa)
Transcriptional regulator n=1 Tax=Burkholderia sp. BT03 RepID=J2J553_9BURK
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EUC18786.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Bu
LysR family transcriptional regulator
SCNpilot_expt_300_bf_scaffold_1112_9
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6893..7402)
DNA (510bp) protein (170aa)
LysR family transcriptional regulator n=2 Tax=Pandoraea RepID=V5UHF9_9BURK
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:AHB07440.1}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandor
SCNpilot_expt_300_bf_scaffold_1112_10
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7436..8605)
DNA (1170bp) protein (390aa)
Extracellular ligand-binding receptor 6 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HXR8_ACHXA
periplasmic binding domain protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGH10165.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamona
SCNpilot_expt_300_bf_scaffold_1112_11
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8764..9363)
DNA (600bp) protein (200aa)
MarR family transcriptional regulator n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3U996_ADVKW
MarR family transcriptional regulator
Transcriptional repressor MprA {ECO:0000313|EMBL:EWS66104.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenop
SCNpilot_expt_300_bf_scaffold_1112_12

Not on your lists

9536..10558
DNA (1023bp) protein (341aa)
Putative exported protein n=1 Tax=uncultured bacterium A1Q1_fos_1050 RepID=L7VPX0_9BACT
Putative exported protein {ECO:0000313|EMBL:AGC70927.1}; TaxID=1256538 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_1050.;"
bug2; extra-cytoplasmic solute receptor
SCNpilot_expt_300_bf_scaffold_1112_13
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10584..11765
DNA (1182bp) protein (394aa)
Ring-hydroxylating dioxygenase, large terminal subunit n=1 Tax=Acidovorax sp. CF316 RepID=J1EGC1_9BURK
Ring-hydroxylating dioxygenase, large terminal subunit {ECO:0000313|EMBL:EJE51361.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;
phenoxybenzoate dioxygenase alpha subunit
SCNpilot_expt_300_bf_scaffold_1112_14
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11731..12720)
DNA (990bp) protein (330aa)
LysR family transcriptional regulator n=1 Tax=Achromobacter piechaudii HLE RepID=J4J8R8_9BURK rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EJO32904.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achr
transcriptional regulator, LysR family
SCNpilot_expt_300_bf_scaffold_1112_15
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12845..13837
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Achromobacter piechaudii HLE RepID=J4YTZ7_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJO32903.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piec
putative Bug-like extracytoplasmic solute binding receptor, TTT family
SCNpilot_expt_300_bf_scaffold_1112_16
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13834..14829
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Achromobacter piechaudii HLE RepID=J4PGG3_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJO32902.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piec
alpha/beta hydrolase fold domain-containing protein
SCNpilot_expt_300_bf_scaffold_1112_17
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14902..15933
DNA (1032bp) protein (344aa)
Vanillate monooxygenase {ECO:0000313|EMBL:EED66666.1}; EC=1.14.13.82 {ECO:0000313|EMBL:EED66666.1};; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F1A21D rbh
Rieske (2Fe-2S) protein
SCNpilot_expt_300_bf_scaffold_1112_18
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16025..17026
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0INN1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB13400.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lac
3-(2,3-dihydroxyphenyl)propionate dioxygenase
SCNpilot_expt_300_bf_scaffold_1112_19
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17062..18036
DNA (975bp) protein (325aa)
Uncharacterized protein UPF0065 n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q477D9_CUPPJ
hypothetical protein
Uncharacterized protein UPF0065 {ECO:0000313|EMBL:AAZ59494.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus
SCNpilot_expt_300_bf_scaffold_1112_20
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18098..18928
DNA (831bp) protein (277aa)
Transcriptional regulator, LuxR family n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JPX0_BURP8
LuxR family transcriptional regulator
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:ACC73311.1}; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Bur
SCNpilot_expt_300_bf_scaffold_1112_21
blood disease bacterium R229, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19029..19670)
DNA (642bp) protein (214aa)
pcaG; Protocatechuate 3,4-dioxygenase, alpha chain (EC:1.13.11.3)
Protocatechuate 3,4-dioxygenase, alpha chain {ECO:0000313|EMBL:CCA79047.1}; EC=1.13.11.3 {ECO:0000313|EMBL:CCA79047.1};; TaxID=741978 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderi
Protocatechuate 3,4-dioxygenase, alpha chain n=2 Tax=Ralstonia RepID=D8NTX3_RALSL rbh
SCNpilot_expt_300_bf_scaffold_1112_22
Acinetobacter bohemicus, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19685..20149)
DNA (465bp) protein (155aa)
pcaH; protocatechuate 3,4-dioxygenase subunit beta (EC:1.13.11.3)
Protocatechuate 3,4-dioxygenase beta chain n=1 Tax=Acinetobacter sp. ANC 3994 RepID=N8NZN9_9GAMM
Protocatechuate 3,4-dioxygenase beta chain {ECO:0000313|EMBL:ENU19630.1}; TaxID=1217715 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source=
Displaying 22 items

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