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SCNpilot_expt_500_bf_scaffold_846

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_846_1
unknown

Not on your lists

3..101
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_846_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

677..1384
DNA (708bp) protein (236aa)
Putative integrase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IHQ7_9SPHN
putative integrase
Putative integrase {ECO:0000313|EMBL:BAK66830.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_500_bf_scaffold_846_3
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1338..2009)
DNA (672bp) protein (224aa)
Chemotaxis protein CheY n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2J7Z0_9BURK
Chemotaxis protein CheY {ECO:0000313|EMBL:ESJ21489.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
LuxR family two component transcriptional regulator
SCNpilot_expt_500_bf_scaffold_846_4
Paenibacillus sp. FSL R7-277, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2145..4439)
DNA (2295bp) protein (765aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1227352 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R7-277.;"
Sensory box histidine kinase/response regulator n=1 Tax=Glaciecola arctica BSs20135 RepID=K6YSQ8_9ALTE
sensory box histidine kinase/response regulator
SCNpilot_expt_500_bf_scaffold_846_5
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4509..4937)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003810D82
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF54323.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_846_6
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4934..6997)
DNA (2064bp) protein (688aa)
Type IV secretion system protein VirD4 n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MHL2_9SPHN rbh
Type IV secretion system protein VirD4 {ECO:0000313|EMBL:CCW16685.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
type IV secretion system protein VirD4; K03205 type IV secretion system protein VirD4 rbh
SCNpilot_expt_500_bf_scaffold_846_7
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7432..8427
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CFII68 RepID=S6I8E5_9PSED rbh
Uncharacterized protein {ECO:0000313|EMBL:EZP55171.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_846_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8457..10205)
DNA (1749bp) protein (583aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPU7_SPHAL rbh
hypothetical protein rbh
Type IV secretory pathway, VirD2 components (Relaxase) {ECO:0000313|EMBL:EZP68898.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
SCNpilot_expt_500_bf_scaffold_846_9
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10450..11268)
DNA (819bp) protein (273aa)
Lytic transglycosylase, catalytic n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPU6_SPHAL rbh
lytic transglycosylase, catalytic rbh
Lytic transglycosylase, catalytic {ECO:0000313|EMBL:ABF54326.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_846_10
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11273..11617)
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000364521C
Uncharacterized protein {ECO:0000313|EMBL:EZP68896.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_846_11
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11608..12207)
DNA (600bp) protein (200aa)
Type IV secretory pathway, protease TraF n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MHM8_9SPHN rbh
Type IV secretory pathway, protease TraF {ECO:0000313|EMBL:CCW16700.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
conjugal transfer protein traF
SCNpilot_expt_500_bf_scaffold_846_12
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12204..12722)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036D643B rbh
Glycosidase {ECO:0000313|EMBL:KEZ19442.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_846_13
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13052..13927)
DNA (876bp) protein (292aa)
Putative replication protein A n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPU2_SPHAL rbh
putative replication protein A rbh
Putative replication protein A {ECO:0000313|EMBL:EZP68893.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
SCNpilot_expt_500_bf_scaffold_846_14
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13933..14232)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MIY1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW16704.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_846_15
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14354..14974)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MHN2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KEZ19439.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_846_16
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15243..15524)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSE5_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS62828.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_500_bf_scaffold_846_17
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15645..15818)
DNA (174bp) protein (58aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IGF3_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA91219.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_500_bf_scaffold_846_18
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15948..16265)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPT8_SPHAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEZ19436.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_expt_500_bf_scaffold_846_19
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16587..17117)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPT6_SPHAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF54336.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_846_20
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17265..17432)
DNA (168bp) protein (56aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000360500C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF54337.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_846_21
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17824..18099
DNA (276bp) protein (92aa)
Histone-like DNA-binding protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPT4_SPHAL
histone-like DNA-binding protein; K03530 DNA-binding protein HU-beta
Histone-like DNA-binding protein {ECO:0000313|EMBL:EZP68886.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
SCNpilot_expt_500_bf_scaffold_846_22
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18161..18481)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003768732
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF54339.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_846_23
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18812..19996)
DNA (1185bp) protein (395aa)
Major facilitator superfamily protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RZI7_9SPHN rbh
major facilitator superfamily protein rbh
Major facilitator superfamily protein {ECO:0000313|EMBL:AGH49160.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_500_bf_scaffold_846_24
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20014..21048)
DNA (1035bp) protein (345aa)
Oxidoreductase, mocA n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S3V6_9SPHN rbh
oxidoreductase, mocA rbh
Oxidoreductase, mocA {ECO:0000313|EMBL:AGH49159.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_500_bf_scaffold_846_25
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21136..22083
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Kushneria aurantia RepID=UPI0003826A3E rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABQ66922.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_500_bf_scaffold_846_26
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22705..23772
DNA (1068bp) protein (356aa)
UPI0003D63BBD related cluster n=1 Tax=unknown RepID=UPI0003D63BBD
Sodium:proton antiporter {ECO:0000313|EMBL:AHE53727.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
Na+/H+ antiporter; K03316 monovalent cation:H+ antiporter, CPA1 family
SCNpilot_expt_500_bf_scaffold_846_27
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23760..24377)
DNA (618bp) protein (206aa)
DNA-3-methyladenine glycosylase {ECO:0000313|EMBL:KEZ19431.1}; EC=3.2.2.20 {ECO:0000313|EMBL:KEZ19431.1};; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
tag; DNA-3-methyladenine glycosylase I (EC:3.2.2.20); K01246 DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
DNA-3-methyladenine glycosylase n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MQU0_9SPHN rbh
SCNpilot_expt_500_bf_scaffold_846_28
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24374..24556)
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MS74_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KEZ19430.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_expt_500_bf_scaffold_846_29
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24692..25621)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MWB0_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KEZ19429.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_846_30
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25927..26712)
DNA (786bp) protein (262aa)
Virulence-associated protein E n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MRK9_9SPHN
Virulence-associated protein E {ECO:0000313|EMBL:KEZ19428.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
Displaying items 1-30 of 39 in total

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