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SCNpilot_expt_500_bf_scaffold_1283

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1283_1
unknown

Not on your lists

3..77
DNA (75bp) protein (25aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1283_2
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(96..875)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3BDG3_9MICO
Oxidoreductase {ECO:0000313|EMBL:EXJ52524.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
short-chain alcohol dehydrogenase of unknown specificity
SCNpilot_expt_500_bf_scaffold_1283_3
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1009..2331
DNA (1323bp) protein (441aa)
cysD; O-acetylhomoserine sulfhydrylase; K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
O-acetylhomoserine/O-acetylserine sulfhydrylase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1Q2_9MICO rbh
O-acetylhomoserine/O-acetylserine sulfhydrylase {ECO:0000313|EMBL:EIC09072.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
SCNpilot_expt_500_bf_scaffold_1283_4
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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2542..3744
DNA (1203bp) protein (401aa)
Homoserine O-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.31 {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070942};; Homoserine O-trans-acetylase {ECO:0000256|HAMAP-Rule:MF_00296}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
metX; homoserine acetyltransferase; K00641 homoserine O-acetyltransferase [EC:2.3.1.31]
Homoserine O-acetyltransferase n=1 Tax=Microbacterium sp. TS-1 RepID=U2XC98_9MICO
SCNpilot_expt_500_bf_scaffold_1283_5
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3792..4118)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Microbacterium RepID=UPI00037EF4DF
Uncharacterized protein {ECO:0000313|EMBL:KEP74721.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1283_6
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4133..5359)
DNA (1227bp) protein (409aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E1P8_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EIC09068.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1283_7
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5370..6263)
DNA (894bp) protein (298aa)
ADP-dependent (S)-NAD(P)H-hydrate dehydratase {ECO:0000256|HAMAP-Rule:MF_01965}; EC=4.2.1.136 {ECO:0000256|HAMAP-Rule:MF_01965};; ADP-dependent NAD(P)HX dehydratase {ECO:0000256|HAMAP-Rule:MF_01965}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
ADP-dependent (S)-NAD(P)H-hydrate dehydratase n=2 Tax=Microbacterium RepID=H8E1P7_9MICO
sugar kinase
SCNpilot_expt_500_bf_scaffold_1283_8
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6348..7421
DNA (1074bp) protein (358aa)
NADH:flavin oxidoreductase/NADH oxidase n=2 Tax=Microbacterium RepID=H8E1P6_9MICO
Oxidoreductase {ECO:0000313|EMBL:KIC58283.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
NADH:flavin oxidoreductase, Old Yellow enzyme family
SCNpilot_expt_500_bf_scaffold_1283_9
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7430..8485)
DNA (1056bp) protein (352aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E1P5_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EIC09065.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hemolysins
SCNpilot_expt_500_bf_scaffold_1283_10
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(8541..9740)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1P4_9MICO
Membrane protein {ECO:0000313|EMBL:EXJ52515.1}; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
hemolysins
SCNpilot_expt_500_bf_scaffold_1283_11
Microbacterium sp. MRS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9893..11350)
DNA (1458bp) protein (486aa)
Inosine 5'-monophosphate dehydrogenase {ECO:0000313|EMBL:EXJ52514.1}; EC=1.1.1.205 {ECO:0000313|EMBL:EXJ52514.1};; TaxID=1451261 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MRS-1.;"
guaB; IMP dehydrogenase/GMP reductase; K00088 IMP dehydrogenase [EC:1.1.1.205]
IMP dehydrogenase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AEJ2_9MICO rbh
SCNpilot_expt_500_bf_scaffold_1283_12
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11397..15194
DNA (3798bp) protein (1266aa)
Alpha-ketoglutarate decarboxylase {ECO:0000313|EMBL:KIC58279.1}; EC=4.1.1.71 {ECO:0000313|EMBL:KIC58279.1};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
kgd; 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component; K00164 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]
2-oxoglutarate dehydrogenase, E1 subunit n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1P0_9MICO rbh
SCNpilot_expt_500_bf_scaffold_1283_13
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15238..16143
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036F875B rbh
Diacylglycerol kinase {ECO:0000313|EMBL:KIC58276.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
diacylglycerol kinase; K07029
SCNpilot_expt_500_bf_scaffold_1283_14
Microbacterium sp. SUBG005, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16163..17470)
DNA (1308bp) protein (436aa)
Predicted esterase n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NBL0_MICTS
Uncharacterized protein {ECO:0000313|EMBL:KEP75691.1}; TaxID=1504156 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SUBG005.;"
esterase
SCNpilot_expt_500_bf_scaffold_1283_15
Microbacterium testaceum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17467..19875)
DNA (2409bp) protein (803aa)
Uncharacterized conserved protein n=1 Tax=Microbacterium testaceum (strain StLB037) RepID=E8NBL1_MICTS
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:BAJ73471.1}; TaxID=979556 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium testaceum (strain StLB037).;"
SCNpilot_expt_500_bf_scaffold_1283_16
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20312..20557)
DNA (246bp) protein (82aa)
Transmembrane transcriptional regulator n=2 Tax=Microbacterium RepID=H8E1N7_9MICO
Mycothiol system anti-sigma-R factor {ECO:0000313|EMBL:EPD86690.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
transmembrane transcriptional regulator
SCNpilot_expt_500_bf_scaffold_1283_17
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20554..21495)
DNA (942bp) protein (314aa)
RNA polymerase sigma-70 factor n=2 Tax=Microbacterium RepID=H8E1N6_9MICO
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:EIC09056.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
sigH; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_500_bf_scaffold_1283_18
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21745..22596
DNA (852bp) protein (284aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
5-enolpyruvylshikimate-3-phosphate synthase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
3-phosphoshikimate 1-carboxyvinyltransferase n=2 Tax=Microbacterium RepID=H8E1N5_9MICO
SCNpilot_expt_500_bf_scaffold_1283_19
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22618..23658
DNA (1041bp) protein (347aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
GTPase; K06949 ribosome biogenesis GTPase [EC:3.6.1.-]
Putative ribosome biogenesis GTPase RsgA n=2 Tax=Microbacterium RepID=H8E1N4_9MICO rbh
SCNpilot_expt_500_bf_scaffold_1283_20
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23695..24162
DNA (468bp) protein (156aa)
Putative Peroxiredoxin {ECO:0000313|EMBL:CDK00674.1}; EC=1.11.1.15 {ECO:0000313|EMBL:CDK00674.1};; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen; K03564 peroxiredoxin Q/BCP [EC:1.11.1.15]
peroxiredoxin n=1 Tax=Microbacterium yannicii RepID=UPI00030AC317
SCNpilot_expt_500_bf_scaffold_1283_21
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24164..24562)
DNA (399bp) protein (133aa)
Signal transduction histidine kinase n=2 Tax=Microbacterium RepID=H8E1N2_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD86695.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
signal transduction histidine kinase
SCNpilot_expt_500_bf_scaffold_1283_22
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24818..25066
DNA (249bp) protein (83aa)
Transcriptional regulator WhiB n=2 Tax=Microbacterium RepID=H8E1N1_9MICO
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
regulatory protein
SCNpilot_expt_500_bf_scaffold_1283_23
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25137..26639)
DNA (1503bp) protein (501aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AXF6_9MICO rbh
signal transduction histidine kinase
SCNpilot_expt_500_bf_scaffold_1283_24
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26739..28013)
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1M9_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EIC09049.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1283_25
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28010..28639)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3BDL4_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD86699.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1283_26
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28736..29017
DNA (282bp) protein (94aa)
Uncharacterized protein n=2 Tax=Microbacterium RepID=H8E1M7_9MICO
Excisionase family DNA binding domain-containing protein {ECO:0000313|EMBL:EPD86700.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1283_27
Microbacterium sp. oral taxon 186, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29501..30094)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3AEL5_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPD86701.1}; TaxID=1203549 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. oral taxon 186 str. F0373.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1283_28
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30223..30657
DNA (435bp) protein (145aa)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1M5_9MICO
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:EIC09045.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
3-hydroxyacyl-CoA dehydrogenase
SCNpilot_expt_500_bf_scaffold_1283_29
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30715..31938)
DNA (1224bp) protein (408aa)
aspC; aspartate/tyrosine/aromatic aminotransferase; K14260 alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
Aminotransferase class I and II n=2 Tax=Microbacterium RepID=H8E1M4_9MICO
Aminotransferase {ECO:0000313|EMBL:KIC58264.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
SCNpilot_expt_500_bf_scaffold_1283_30
Microbacterium hominis, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32032..34806)
DNA (2775bp) protein (925aa)
Protein translocase subunit SecA n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3BDM0_9MICO rbh
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
secA; preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA rbh
Displaying 30 items

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