name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_500_bf_scaffold_1290_1
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1..597)
|
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MUU6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW19402.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
|
|
SCNpilot_expt_500_bf_scaffold_1290_2
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(688..1953)
|
HfaB protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MR19_9SPHN
rbh
HfaB protein {ECO:0000313|EMBL:CCW19401.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
Putative protein involved in formation of curli polymers-like protein
|
|
SCNpilot_expt_500_bf_scaffold_1290_3
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2022..2561)
|
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MQ92_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KEZ19472.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_1290_4
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2576..2977
|
Uncharacterized protein {ECO:0000313|EMBL:KEZ19471.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
|
|
SCNpilot_expt_500_bf_scaffold_1290_5
bacterium YEK0313, Bacteria
|
Not on your lists |
comp(2966..3658)
|
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000377700D
Uncharacterized protein {ECO:0000313|EMBL:CEJ14707.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_1290_6
bacterium YEK0313, Bacteria
|
Not on your lists |
comp(3658..4314)
|
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000376277B
Uncharacterized protein {ECO:0000313|EMBL:CEJ14706.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_1290_7
Tolypothrix sp. PCC 7601, Tolypothrix, Nostocales, Cyanobacteria, Bacteria
|
Not on your lists |
4506..4775
|
hypothetical protein n=1 Tax=Geitlerinema sp. PCC 7105 RepID=UPI00034C98C0
Uncharacterized protein {ECO:0000313|EMBL:EKE99475.1}; TaxID=1188 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix sp. PCC 7601.;"
ATP-dependent OLD family endonuclease
|
|
SCNpilot_expt_500_bf_scaffold_1290_8
Tolypothrix sp. PCC 7601, Tolypothrix, Nostocales, Cyanobacteria, Bacteria
|
Not on your lists |
4844..6922
|
ATP-dependent OLD family endonuclease n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E7BE
rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE99475.1}; TaxID=1188 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix sp. PCC 7601.;"
ATP-dependent OLD family endonuclease
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1290_9
unknown
|
Not on your lists |
comp(7003..7095)
|
This feature has no annotations |
|
SCNpilot_expt_500_bf_scaffold_1290_10
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7097..7954)
|
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CACF9
rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHH09257.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_1290_11
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8478..9989)
|
UPI0003D5F591 related cluster n=1 Tax=unknown RepID=UPI0003D5F591
rbh
Ubiquinone biosynthesis protein {ECO:0000313|EMBL:ETI62754.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
ubiquinone biosynthesis protein; K03688 ubiquinone biosynthesis protein
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1290_12
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10430..11050
|
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MVQ6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW19398.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
|
|
SCNpilot_expt_500_bf_scaffold_1290_13
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11128..11775
|
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S7B1_9SPHN
rbh
Uncharacterized protein {ECO:0000313|EMBL:KEZ19409.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1290_14
unknown
|
Not on your lists |
11841..12014
|
This feature has no annotations |
|
SCNpilot_expt_500_bf_scaffold_1290_15
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11949..12617)
|
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI00035FE3A1
Uncharacterized protein {ECO:0000313|EMBL:AJR26919.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_1290_16
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12562..13491)
|
SMF protein n=1 Tax=Methylocystis parvus RepID=UPI0002F4E105
rbh
DNA-binding protein {ECO:0000313|EMBL:AJR26920.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SMF protein; K04096 DNA processing protein
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1290_17
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13760..14002)
|
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036571FE
Uncharacterized protein {ECO:0000313|EMBL:KEZ19468.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_1290_18
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13999..15288)
|
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003676F65
rbh
conjugation TrbI-like protein; K03195 type IV secretion system protein VirB10
rbh
Conjugation TrbI-like protein {ECO:0000313|EMBL:ABF54311.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
|
|
SCNpilot_expt_500_bf_scaffold_1290_19
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15285..16202)
|
Conjugal transfer protein TrbG/VirB9/CagX n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPW0_SPHAL
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9
Conjugal transfer protein TrbG/VirB9/CagX {ECO:0000313|EMBL:ABF54312.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
|
|
SCNpilot_expt_500_bf_scaffold_1290_20
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16199..16882)
|
Conjugal transfer protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPV9_SPHAL
rbh
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
rbh
Conjugal transfer protein {ECO:0000313|EMBL:ABF54313.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
|
|
SCNpilot_expt_500_bf_scaffold_1290_21
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17133..18215)
|
hypothetical protein, partial n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036FF132
rbh
TrbL/VirB6 plasmid conjugal transfer protein {ECO:0000313|EMBL:EZP68907.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
|
|
SCNpilot_expt_500_bf_scaffold_1290_22
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18212..18469)
|
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPV7_SPHAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF54315.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
|
|
SCNpilot_expt_500_bf_scaffold_1290_23
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18483..19202)
|
Conjugative transfer protein TrbJ n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MRA2_9SPHN
rbh
Conjugative transfer protein TrbJ {ECO:0000313|EMBL:CCW17978.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
conjugal transfer protein TrbJ
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1290_24
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19215..21650)
|
conjugal transfer protein TrbE n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000378C957
rbh
Conjugative transfer protein TrbE {ECO:0000313|EMBL:KEZ19461.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
|
|
SCNpilot_expt_500_bf_scaffold_1290_25
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21647..21916)
|
Type IV secretory pathway, VirB3-like family protein n=2 Tax=Sphingomonadaceae RepID=F3X045_9SPHN
Conjugal transfer protein {ECO:0000313|EMBL:EQB12126.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
type IV secretory pathway, VirB3 family protein; K03198 type IV secretion system protein VirB3
|
|
SCNpilot_expt_500_bf_scaffold_1290_26
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21916..22251)
|
Conjugative transfer protein TrbC n=1 Tax=Sphingobium japonicum BiD32 RepID=N1ML59_9SPHN
Conjugative transfer protein TrbC {ECO:0000313|EMBL:KEZ19459.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
type IV secretion system protein VirB2; K03197 type IV secretion system protein VirB2
|
|
SCNpilot_expt_500_bf_scaffold_1290_27
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22248..23228)
|
Type II secretion system protein E n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPV2_SPHAL
rbh
Type II secretion system protein E {ECO:0000313|EMBL:EZP68902.1}; Flags: Precursor;; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
type II secretion system protein E; K03196 type IV secretion system protein VirB11
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1290_28
unknown
|
Not on your lists |
comp(23309..23425)
|
This feature has no annotations |
|
SCNpilot_expt_500_bf_scaffold_1290_29
unknown
|
Not on your lists |
comp(23482..24291)
|
This feature has no annotations |
|
SCNpilot_expt_500_bf_scaffold_1290_30
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24343..25332)
|
Regulatory protein, LysR:LysR, substrate-binding n=1 Tax=Sphingobium japonicum BiD32 RepID=N1ML54_9SPHN
rbh
LysR:LysR substrate-binding regulatory protein {ECO:0000313|EMBL:KEZ19457.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
transcriptional regulator
|