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SCNpilot_expt_500_bf_scaffold_1290

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1290_1
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..597)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MUU6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW19402.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
SCNpilot_expt_500_bf_scaffold_1290_2
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(688..1953)
DNA (1266bp) protein (422aa)
HfaB protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MR19_9SPHN rbh
HfaB protein {ECO:0000313|EMBL:CCW19401.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
Putative protein involved in formation of curli polymers-like protein
SCNpilot_expt_500_bf_scaffold_1290_3
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2022..2561)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MQ92_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KEZ19472.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1290_4
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2576..2977
DNA (402bp) protein (134aa)
Uncharacterized protein {ECO:0000313|EMBL:KEZ19471.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_expt_500_bf_scaffold_1290_5
bacterium YEK0313, Bacteria

Not on your lists

comp(2966..3658)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000377700D
Uncharacterized protein {ECO:0000313|EMBL:CEJ14707.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1290_6
bacterium YEK0313, Bacteria

Not on your lists

comp(3658..4314)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000376277B
Uncharacterized protein {ECO:0000313|EMBL:CEJ14706.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1290_7
Tolypothrix sp. PCC 7601, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

4506..4775
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Geitlerinema sp. PCC 7105 RepID=UPI00034C98C0
Uncharacterized protein {ECO:0000313|EMBL:EKE99475.1}; TaxID=1188 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix sp. PCC 7601.;"
ATP-dependent OLD family endonuclease
SCNpilot_expt_500_bf_scaffold_1290_8
Tolypothrix sp. PCC 7601, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

4844..6922
DNA (2079bp) protein (693aa)
ATP-dependent OLD family endonuclease n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E7BE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKE99475.1}; TaxID=1188 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix sp. PCC 7601.;"
ATP-dependent OLD family endonuclease rbh
SCNpilot_expt_500_bf_scaffold_1290_9
unknown

Not on your lists

comp(7003..7095)
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1290_10
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7097..7954)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CACF9 rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHH09257.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1290_11
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8478..9989)
DNA (1512bp) protein (504aa)
UPI0003D5F591 related cluster n=1 Tax=unknown RepID=UPI0003D5F591 rbh
Ubiquinone biosynthesis protein {ECO:0000313|EMBL:ETI62754.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
ubiquinone biosynthesis protein; K03688 ubiquinone biosynthesis protein rbh
SCNpilot_expt_500_bf_scaffold_1290_12
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10430..11050
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MVQ6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW19398.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
SCNpilot_expt_500_bf_scaffold_1290_13
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11128..11775
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S7B1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KEZ19409.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_1290_14
unknown

Not on your lists

11841..12014
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1290_15
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11949..12617)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI00035FE3A1
Uncharacterized protein {ECO:0000313|EMBL:AJR26919.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1290_16
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12562..13491)
DNA (930bp) protein (310aa)
SMF protein n=1 Tax=Methylocystis parvus RepID=UPI0002F4E105 rbh
DNA-binding protein {ECO:0000313|EMBL:AJR26920.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SMF protein; K04096 DNA processing protein rbh
SCNpilot_expt_500_bf_scaffold_1290_17
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13760..14002)
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036571FE
Uncharacterized protein {ECO:0000313|EMBL:KEZ19468.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1290_18
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13999..15288)
DNA (1290bp) protein (430aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003676F65 rbh
conjugation TrbI-like protein; K03195 type IV secretion system protein VirB10 rbh
Conjugation TrbI-like protein {ECO:0000313|EMBL:ABF54311.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_1290_19
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15285..16202)
DNA (918bp) protein (306aa)
Conjugal transfer protein TrbG/VirB9/CagX n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPW0_SPHAL
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9
Conjugal transfer protein TrbG/VirB9/CagX {ECO:0000313|EMBL:ABF54312.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_1290_20
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16199..16882)
DNA (684bp) protein (228aa)
Conjugal transfer protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPV9_SPHAL rbh
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5 rbh
Conjugal transfer protein {ECO:0000313|EMBL:ABF54313.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_1290_21
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17133..18215)
DNA (1083bp) protein (361aa)
hypothetical protein, partial n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036FF132 rbh
TrbL/VirB6 plasmid conjugal transfer protein {ECO:0000313|EMBL:EZP68907.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_expt_500_bf_scaffold_1290_22
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18212..18469)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPV7_SPHAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF54315.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_1290_23
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18483..19202)
DNA (720bp) protein (240aa)
Conjugative transfer protein TrbJ n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MRA2_9SPHN rbh
Conjugative transfer protein TrbJ {ECO:0000313|EMBL:CCW17978.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
conjugal transfer protein TrbJ rbh
SCNpilot_expt_500_bf_scaffold_1290_24
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19215..21650)
DNA (2436bp) protein (812aa)
conjugal transfer protein TrbE n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000378C957 rbh
Conjugative transfer protein TrbE {ECO:0000313|EMBL:KEZ19461.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
SCNpilot_expt_500_bf_scaffold_1290_25
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21647..21916)
DNA (270bp) protein (90aa)
Type IV secretory pathway, VirB3-like family protein n=2 Tax=Sphingomonadaceae RepID=F3X045_9SPHN
Conjugal transfer protein {ECO:0000313|EMBL:EQB12126.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
type IV secretory pathway, VirB3 family protein; K03198 type IV secretion system protein VirB3
SCNpilot_expt_500_bf_scaffold_1290_26
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21916..22251)
DNA (336bp) protein (112aa)
Conjugative transfer protein TrbC n=1 Tax=Sphingobium japonicum BiD32 RepID=N1ML59_9SPHN
Conjugative transfer protein TrbC {ECO:0000313|EMBL:KEZ19459.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
type IV secretion system protein VirB2; K03197 type IV secretion system protein VirB2
SCNpilot_expt_500_bf_scaffold_1290_27
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22248..23228)
DNA (981bp) protein (327aa)
Type II secretion system protein E n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPV2_SPHAL rbh
Type II secretion system protein E {ECO:0000313|EMBL:EZP68902.1}; Flags: Precursor;; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
type II secretion system protein E; K03196 type IV secretion system protein VirB11 rbh
SCNpilot_expt_500_bf_scaffold_1290_28
unknown

Not on your lists

comp(23309..23425)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1290_29
unknown

Not on your lists

comp(23482..24291)
DNA (810bp) protein (270aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1290_30
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24343..25332)
DNA (990bp) protein (330aa)
Regulatory protein, LysR:LysR, substrate-binding n=1 Tax=Sphingobium japonicum BiD32 RepID=N1ML54_9SPHN rbh
LysR:LysR substrate-binding regulatory protein {ECO:0000313|EMBL:KEZ19457.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
transcriptional regulator
Displaying items 1-30 of 43 in total

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