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SCNpilot_expt_500_bf_scaffold_14600

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Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_14600_1

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3446..4081
DNA (636bp) protein (212aa)
Uncharacterized protein {ECO:0000313|EMBL:KGA20250.1}; Flags: Fragment;; TaxID=449393 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
SCNpilot_expt_500_bf_scaffold_14600_2
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4308..5210)
DNA (903bp) protein (301aa)
tetrapyrrole methylase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G9R9_SORC5
SCNpilot_expt_500_bf_scaffold_14600_3
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5231..6439)
DNA (1209bp) protein (403aa)
RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G9R6_SORC5 rbh
RNA polymerase sigma factor rpoD; K03089 RNA polymerase sigma-32 factor rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCNpilot_expt_500_bf_scaffold_14600_4
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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6777..8168
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GHZ0_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN90176.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCNpilot_expt_500_bf_scaffold_14600_5
unknown

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8178..8432
DNA (255bp) protein (85aa)

This feature has no annotations

Displaying 5 items

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