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SCNpilot_expt_500_bf_scaffold_282

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_282_1
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

144..1526
DNA (1383bp) protein (461aa)
hypothetical protein n=1 Tax=Duganella zoogloeoides RepID=UPI0003820494 rbh
Pectin lyase fold-containing protein {ECO:0000313|EMBL:KFC71462.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
glycoside hydrolase family 28 rbh
SCNpilot_expt_500_bf_scaffold_282_2
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1523..2305)
DNA (783bp) protein (261aa)
IclR family transcriptional regulator n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C72C rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU74709.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
IclR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_282_3
Cellvibrio sp. BR, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2587..5493
DNA (2907bp) protein (969aa)
TonB-dependent receptor n=1 Tax=Cellvibrio sp. BR RepID=I3I9J0_9GAMM rbh
TonB-dependent receptor {ECO:0000313|EMBL:EIK44725.1}; TaxID=1134474 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio sp. BR.;"
tonb-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_282_4
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5562..6782)
DNA (1221bp) protein (407aa)
Lysophospholipase L1-like esterase n=1 Tax=Sphingobium sp. AP49 RepID=J2WMA3_9SPHN rbh
Lysophospholipase L1-like esterase {ECO:0000313|EMBL:EJK84078.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
G-D-S-L family lipolytic protein rbh
SCNpilot_expt_500_bf_scaffold_282_5
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6870..8414
DNA (1545bp) protein (515aa)
abfA; alpha-L-arabinosidase (EC:3.2.1.55); K01209 alpha-N-arabinofuranosidase [EC:3.2.1.55] rbh
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00035CD81E rbh
Uncharacterized protein {ECO:0000313|EMBL:GAM01015.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_expt_500_bf_scaffold_282_6
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8411..9853
DNA (1443bp) protein (481aa)
Exo-poly-alpha-D-galacturonosidase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NEH2_9SPHN rbh
Exo-poly-alpha-D-galacturonosidase {ECO:0000313|EMBL:EAT09378.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
glycoside hydrolase family 28 rbh
SCNpilot_expt_500_bf_scaffold_282_7
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9960..10253
DNA (294bp) protein (98aa)
L-rhamnose mutarotase {ECO:0000256|HAMAP-Rule:MF_01663, ECO:0000256|SAAS:SAAS00048862}; EC=5.1.3.32 {ECO:0000256|HAMAP-Rule:MF_01663, ECO:0000256|SAAS:SAAS00169483};; Rhamnose 1-epimerase {ECO:0000256|HAMAP-Rule:MF_01663}; Type-3 mutarotase {ECO:0000256|HAMAP-Rule:MF_01663}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000369B071
hypothetical protein
SCNpilot_expt_500_bf_scaffold_282_8
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10253..13228
DNA (2976bp) protein (992aa)
beta-galactosidase (EC:3.2.1.23) rbh
beta-galactosidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031D09CE rbh
Beta-galactosidase {ECO:0000313|EMBL:KFD28447.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_expt_500_bf_scaffold_282_9
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13244..14344
DNA (1101bp) protein (367aa)
glycoside hydrolase family protein; K15532 unsaturated rhamnogalacturonyl hydrolase [EC:3.2.1.172] rbh
glycosyl hydrolase family 88 n=1 Tax=Sphingomonas elodea RepID=UPI0002630589 rbh
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_500_bf_scaffold_282_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14410..15210)
DNA (801bp) protein (267aa)
G-D-S-L family lipolytic protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630872
Uncharacterized protein {ECO:0000313|EMBL:EKU74687.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
G-D-S-L family lipolytic protein
SCNpilot_expt_500_bf_scaffold_282_11
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15207..16691)
DNA (1485bp) protein (495aa)
major facilitator transporter n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000364D8A6 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU74700.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
oligogalacturonide transporter rbh
SCNpilot_expt_500_bf_scaffold_282_12
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16835..18160
DNA (1326bp) protein (442aa)
hypothetical protein; K01730 oligogalacturonide lyase [EC:4.2.2.6] rbh
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D936_SPHYA rbh
Oligogalacturonate lyase {ECO:0000313|EMBL:EXS71534.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
SCNpilot_expt_500_bf_scaffold_282_13
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18157..19359
DNA (1203bp) protein (401aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NEH9_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EAT09371.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
lipoprotein
SCNpilot_expt_500_bf_scaffold_282_14
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19335..20453)
DNA (1119bp) protein (373aa)
Aldose 1-epimerase {ECO:0000313|EMBL:AKH43226.1}; EC=5.1.3.3 {ECO:0000313|EMBL:AKH43226.1};; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
aldose 1-epimerase (EC:5.1.3.3); K01785 aldose 1-epimerase [EC:5.1.3.3]
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI00037504A1
SCNpilot_expt_500_bf_scaffold_282_15
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20450..23125)
DNA (2676bp) protein (892aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2D4W9_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EJK84749.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_282_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23122..23751)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003786FC7
Sphingomonas taxi strain 30a NODE_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30231.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_282_17
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23769..26576)
DNA (2808bp) protein (936aa)
UPI0003D5D063 related cluster n=1 Tax=unknown RepID=UPI0003D5D063 rbh
TonB-dependent receptor {ECO:0000313|EMBL:KHL26656.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
tonb-dependent receptor rbh
SCNpilot_expt_500_bf_scaffold_282_18
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26885..27961)
DNA (1077bp) protein (359aa)
Capsule synthesis protein n=1 Tax=Asticcacaulis sp. AC460 RepID=V4PLX6_9CAUL rbh
Putative enzyme of poly-gamma-glutamate biosynthesis (Capsule formation)-like protein {ECO:0000313|EMBL:EZP52573.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein; K07282 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein) rbh
SCNpilot_expt_500_bf_scaffold_282_19
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27958..29151)
DNA (1194bp) protein (398aa)
CoA-transferase family III family protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MK66_9BURK
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:EZP52572.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_282_20
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29148..30323)
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI000374A6F5 rbh
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:EZP52571.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
L-carnitine dehydratase/bile acid-inducible protein F
SCNpilot_expt_500_bf_scaffold_282_21
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30320..32620)
DNA (2301bp) protein (767aa)
2-hydroxyglutaryl-CoA dehydratase D-component n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VDH5_CAUST rbh
Benzoyl-CoA reductase, bzd-type, O subunit {ECO:0000313|EMBL:EZP52570.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
2-hydroxyglutaryl-CoA dehydratase subunit D rbh
SCNpilot_expt_500_bf_scaffold_282_22
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32620..33858)
DNA (1239bp) protein (413aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QKR2_BRESC rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE54408.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
L-carnitine dehydratase/bile acid-inducible protein F rbh
SCNpilot_expt_500_bf_scaffold_282_23
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33851..34891)
DNA (1041bp) protein (347aa)
TRAP dicarboxylate transporter-DctP subunit n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ILA6_9SPHN rbh
Neu5Ac-binding protein {ECO:0000313|EMBL:EZP52568.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
TRAP dicarboxylate transporter subunit DctP rbh
SCNpilot_expt_500_bf_scaffold_282_24
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34896..36200)
DNA (1305bp) protein (435aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC460 RepID=V4PPK0_9CAUL rbh
Neu5Ac permease {ECO:0000313|EMBL:EZP52567.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
TRAP dicarboxylate transporter subunit DctM rbh
SCNpilot_expt_500_bf_scaffold_282_25
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36197..36691)
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC460 RepID=V4PUK1_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:AHE54405.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_expt_500_bf_scaffold_282_26
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36865..37329
DNA (465bp) protein (155aa)
Transcriptional regulator, MarR family n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VJZ8_CAUST
Uncharacterized protein {ECO:0000313|EMBL:AHE54404.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
MarR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_282_27
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37559..40207
DNA (2649bp) protein (883aa)
TonB-dependent receptor n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ILA0_9SPHN rbh
TonB-dependent receptor {ECO:0000313|EMBL:KHS43918.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_expt_500_bf_scaffold_282_28
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40207..41964
DNA (1758bp) protein (586aa)
Peptidase S15 n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ICI6_9SPHN rbh
peptidase S15; K06978 rbh
Peptidase S15 {ECO:0000313|EMBL:CCA90011.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_500_bf_scaffold_282_29
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42024..44711
DNA (2688bp) protein (896aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ICP8_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE52359.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_282_30
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44713..45681)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ICP7_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KHS43907.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein rbh
Displaying items 1-30 of 31 in total

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