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SCNpilot_expt_500_bf_scaffold_443

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_443_1
Asticcacaulis benevestitus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..530
DNA (528bp) protein (176aa)
hypothetical protein; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1]
Uncharacterized protein n=1 Tax=Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 RepID=V4NZT5_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ81426.1}; TaxID=1121022 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896.;"
SCNpilot_expt_500_bf_scaffold_443_2
unknown

Not on your lists

comp(599..703)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_443_3
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1101..1559)
DNA (459bp) protein (153aa)
SnoaL-like domain protein {ECO:0000313|EMBL:AKH43895.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_500_bf_scaffold_443_4
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1510..2907)
DNA (1398bp) protein (466aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HBQ7_9SPHN rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:KJF70262.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
benzaldehyde-derivatives dehydrogenase
SCNpilot_expt_500_bf_scaffold_443_5
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2910..3803)
DNA (894bp) protein (298aa)
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] rbh
Bifunctional protein FolD 1 {ECO:0000255|HAMAP-Rule:MF_01576}; Includes:; Methylenetetrahydrofolate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01576}; EC=1.5.1.5 {ECO:0000255|HAMAP-Rule:MF_01576};; Includes:; Methenyltetrahydrofolate cyclohydrolase {ECO:0000255|HAMAP-Rule:MF_01576}; EC=3.5.4.9 {ECO:0000255|HAMAP-Rule:MF_01576};; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 1
5,10-methylene-tetrahydrofolate dehydrogenase n=1 Tax=Sphingobium xenophagum RepID=UPI0002FED0A8 rbh
SCNpilot_expt_500_bf_scaffold_443_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3787..4641)
DNA (855bp) protein (285aa)
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927, ECO:0000313|EMBL:AJP74162.1}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927, ECO:0000313|EMBL:AJP74162.1};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
purU; formyltetrahydrofolate deformylase (EC:3.5.1.10); K01433 formyltetrahydrofolate deformylase [EC:3.5.1.10]
Formyltetrahydrofolate deformylase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4C5_NOVAD
SCNpilot_expt_500_bf_scaffold_443_7
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4666..5178)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Frankia sp. QA3 RepID=I8QKC9_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EIV92857.1}; TaxID=710111 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. QA3.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_443_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5196..6485)
DNA (1290bp) protein (430aa)
Aminomethyltransferase, putative n=1 Tax=Pseudomonas putida (strain KT2440) RepID=Q88LI8_PSEPK
Glycine cleavage T protein (Aminomethyl transferase) {ECO:0000313|EMBL:EZP74548.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
glycine cleavage system protein T
SCNpilot_expt_500_bf_scaffold_443_9
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6497..7285)
DNA (789bp) protein (263aa)
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMD8_9SPHN
putative oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
SCNpilot_expt_500_bf_scaffold_443_10
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7272..7667)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00036C1730
Possible membrane protein {ECO:0000313|EMBL:CCW20334.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_443_11
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7669..8961)
DNA (1293bp) protein (431aa)
Aminomethyltransferase, putative n=1 Tax=Pseudomonas putida (strain KT2440) RepID=Q88LI8_PSEPK rbh
Glycine cleavage T protein (Aminomethyl transferase) {ECO:0000313|EMBL:EZP74548.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
glycine cleavage system protein T rbh
SCNpilot_expt_500_bf_scaffold_443_12
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9079..9990
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00031CFAAA
Transcriptional regulator, LysR family {ECO:0000313|EMBL:KFG91766.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
LysR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_443_13
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10039..10974)
DNA (936bp) protein (312aa)
NmrA-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4H9_NOVAD
NmrA-like protein
NmrA-like protein {ECO:0000313|EMBL:ABD27244.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_500_bf_scaffold_443_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10979..12445)
DNA (1467bp) protein (489aa)
Putative dioxygenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IKS0_9SPHN rbh
putative dioxygenase rbh
Putative dioxygenase {ECO:0000313|EMBL:BAK67472.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_500_bf_scaffold_443_15
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12442..13317)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GV91_9SPHN
3-hydroxyisobutyrate dehydrogenase-related protein {ECO:0000313|EMBL:EZP74555.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
6-phosphogluconate dehydrogenase protein
SCNpilot_expt_500_bf_scaffold_443_16
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13314..13712)
DNA (399bp) protein (133aa)
Gamma-carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
Gamma-carboxymuconolactone decarboxylase protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IXH5_POLGS
Gamma-carboxymuconolactone decarboxylase protein {ECO:0000313|EMBL:ADZ71598.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_500_bf_scaffold_443_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13745..16057)
DNA (2313bp) protein (771aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003076375
Uncharacterized protein {ECO:0000313|EMBL:GAO55040.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor-like protein
SCNpilot_expt_500_bf_scaffold_443_18
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16087..17541)
DNA (1455bp) protein (485aa)
Aldehyde dehydrogenase n=1 Tax=Pseudomonas fluorescens F113 RepID=G8PWK3_PSEFL rbh
aldehyde dehydrogenase rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:AEV62579.1}; TaxID=1114970 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens F113.;"
SCNpilot_expt_500_bf_scaffold_443_19
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17541..19277)
DNA (1737bp) protein (579aa)
Choline dehydrogenase n=1 Tax=Pseudomonas fluorescens F113 RepID=G8PWK7_PSEFL rbh
choline dehydrogenase rbh
Choline dehydrogenase {ECO:0000313|EMBL:AEV62583.1}; TaxID=1114970 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens F113.;"
SCNpilot_expt_500_bf_scaffold_443_20
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19416..20303
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00031CFAAA
Putative transcriptional regulator protein, LysR family {ECO:0000313|EMBL:EGE56561.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
LysR family transcriptional regulator
SCNpilot_expt_500_bf_scaffold_443_21
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20609..21229
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LFY8_AGRSH rbh
Transcriptional regulator {ECO:0000313|EMBL:EXL01785.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_443_22
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21222..21827
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HSE2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EXL01784.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_443_23
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22226..22450)
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003752D13
Uncharacterized protein {ECO:0000313|EMBL:GAO52981.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
WGR domain-containing protein
SCNpilot_expt_500_bf_scaffold_443_24
Microgenomates bacterium GW2011_GWE1_47_12, Microgenomates, Bacteria

Not on your lists

comp(22650..22925)
DNA (276bp) protein (92aa)
transcriptional regulator n=1 Tax=Sphingobium xenophagum RepID=UPI0002F94CB9
Nucleoid DNA-binding protein {ECO:0000313|EMBL:KKU60366.1}; TaxID=1618535 species="Bacteria; Microgenomates.;" source="Microgenomates bacterium GW2011_GWE1_47_12.;"
histone-like DNA-binding protein; K03530 DNA-binding protein HU-beta
SCNpilot_expt_500_bf_scaffold_443_25
unknown

Not on your lists

comp(22985..23236)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_443_26
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23233..23940)
DNA (708bp) protein (236aa)
Uncharacterized protein n=2 Tax=Sphingomonadaceae RepID=N1MGM2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW15919.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_443_27
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23906..24196)
DNA (291bp) protein (97aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4L2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD60451.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_expt_500_bf_scaffold_443_28
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24197..24574)
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4L3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD60452.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_443_29
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24601..25269)
DNA (669bp) protein (223aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8S0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59337.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_443_30
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25295..26251)
DNA (957bp) protein (319aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8S4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59333.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
Displaying items 1-30 of 36 in total

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