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SCNpilot_expt_500_bf_scaffold_2059

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_2059_1
unknown

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3..374
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_2059_2
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(437..1744)
DNA (1308bp) protein (436aa)
Fis family two component sigma-54 specific transcriptional regulator id=5081118 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD rbh
Fis family two component sigma-54 specific transcriptional regulator rbh
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_500_bf_scaffold_2059_3
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1741..3186)
DNA (1446bp) protein (482aa)
Periplasmic sensor signal transduction histidine kinase id=1265335 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
periplasmic sensor signal transduction histidine kinase rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_500_bf_scaffold_2059_4
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3186..4049)
DNA (864bp) protein (288aa)
Phosphonate-binding periplasmic protein id=1265334 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
phosphonate-binding periplasmic protein rbh
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_500_bf_scaffold_2059_5
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4213..4737
DNA (525bp) protein (175aa)
twin-arginine translocation pathway signal protein (EC:1.20.98.1); K08355 arsenite oxidase small subunit [EC:1.20.9.1]
Arsenite oxidase small subunit Rieske type subunit id=1265333 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_500_bf_scaffold_2059_6
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4748..7231
DNA (2484bp) protein (828aa)
arsenate reductase (azurin) (EC:1.20.98.1); K08356 arsenite oxidase large subunit [EC:1.20.9.1] rbh
Arsenite oxidase large subunit id=1265332 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria rbh
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_500_bf_scaffold_2059_7
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7299..7613
DNA (315bp) protein (105aa)
Cytochrome c class I n=1 Tax=Acidovorax sp. NO-1 RepID=E3UH34_9BURK
Cytochrome c class I {ECO:0000313|EMBL:ADO32567.1}; Cytochrome c, class I {ECO:0000313|EMBL:EHL22938.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
cytochrome C, class I
SCNpilot_expt_500_bf_scaffold_2059_8
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7666..8313
DNA (648bp) protein (216aa)
Nitroreductase n=1 Tax=Acidovorax sp. NO-1 RepID=E3UH35_9BURK rbh
Nitroreductase {ECO:0000313|EMBL:ADO32568.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
nitroreductase
SCNpilot_expt_500_bf_scaffold_2059_9
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8576..9529
DNA (954bp) protein (318aa)
molybdenum cofactor biosynthesis protein MoeA n=1 Tax=Chryseobacterium taeanense RepID=UPI00031F398F
molybdenum cofactor biosynthesis protein A; K03639 molybdenum cofactor biosynthesis protein
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_expt_500_bf_scaffold_2059_10
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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9596..9694
DNA (99bp) protein (33aa)
Putative NADPH-dependent FMN reductase {ECO:0000313|EMBL:ENO89303.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
SCNpilot_expt_500_bf_scaffold_2059_11
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10191..10736)
DNA (546bp) protein (182aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;"
DNA topoisomerase III (EC:5.99.1.2)
DNA topoisomerase n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HYT2_PSEUO
Displaying 11 items

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