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SCNpilot_expt_500_bf_scaffold_3630

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3630_1
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(81..704)
DNA (624bp) protein (208aa)
Putative partition-related protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF00_9PROT rbh
Putative partition-related protein {ECO:0000313|EMBL:CCU61171.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein
SCNpilot_expt_500_bf_scaffold_3630_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(739..1371)
DNA (633bp) protein (211aa)
Segregation and condensation protein B n=1 Tax=Nitrosospira sp. APG3 RepID=M5DP01_9PROT
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
putative transcriptional regulator; K06024 segregation and condensation protein B
SCNpilot_expt_500_bf_scaffold_3630_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1352..2161)
DNA (810bp) protein (270aa)
Segregation and condensation protein A n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFM3_9PROT rbh
Segregation and condensation protein A {ECO:0000256|SAAS:SAAS00093938, ECO:0000313|EMBL:KIO48270.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
chromosome segregation and condensation protein ScpA; K05896 segregation and condensation protein A rbh
SCNpilot_expt_500_bf_scaffold_3630_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2377..3552)
DNA (1176bp) protein (392aa)
Tryptophan--tRNA ligase {ECO:0000313|EMBL:KIO48271.1}; EC=6.1.1.2 {ECO:0000313|EMBL:KIO48271.1};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] rbh
Tryptophanyl-tRNA synthetase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DG44_9PROT rbh
SCNpilot_expt_500_bf_scaffold_3630_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3688..4329)
DNA (642bp) protein (214aa)
FIG004556: membrane metalloprotease n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFU0_9PROT rbh
Peptidase M50 {ECO:0000313|EMBL:KIO48272.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
peptidase M50 rbh
SCNpilot_expt_500_bf_scaffold_3630_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4322..4885)
DNA (564bp) protein (188aa)
YciO family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DEZ9_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:KIO48273.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Sua5/YciO/YrdC/YwlC; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein rbh
SCNpilot_expt_500_bf_scaffold_3630_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5106..5942)
DNA (837bp) protein (279aa)
COG0613, Predicted metal-dependent phosphoesterases (PHP family) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DNZ6_9PROT rbh
Phosphoesterase {ECO:0000313|EMBL:KIO48274.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
PHP-like protein; K07053 rbh
SCNpilot_expt_500_bf_scaffold_3630_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6786..8249
DNA (1464bp) protein (488aa)
uroporphyrin-III C-methyltransferase; K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] rbh
Siroheme synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DG40_9PROT rbh
Siroheme synthase {ECO:0000256|HAMAP-Rule:MF_01646}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
SCNpilot_expt_500_bf_scaffold_3630_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8303..8941)
DNA (639bp) protein (213aa)
peroxidase (EC:1.11.1.7) rbh
Alkyl hydroperoxide reductase subunit C-like protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFT6_9PROT rbh
Peroxidase {ECO:0000313|EMBL:KIO48276.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_expt_500_bf_scaffold_3630_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9043..10443)
DNA (1401bp) protein (467aa)
Membrane-bound lytic murein transglycosylase F {ECO:0000256|HAMAP-Rule:MF_02016}; EC=4.2.2.n1 {ECO:0000256|HAMAP-Rule:MF_02016};; Murein lyase F {ECO:0000256|HAMAP-Rule:MF_02016}; Flags: Precursor;; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Membrane-bound lytic murein transglycosylase F n=1 Tax=Nitrosospira sp. APG3 RepID=M5DEZ8_9PROT rbh
putative transglycosylase rbh
SCNpilot_expt_500_bf_scaffold_3630_11
unknown

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comp(10800..10925)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3630_12
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11158..11871
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI00036B81AE
Uncharacterized protein {ECO:0000313|EMBL:AKD58717.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCNpilot_expt_500_bf_scaffold_3630_13
unknown

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comp(11960..12496)
DNA (537bp) protein (179aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3630_14
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13767..14324)
DNA (558bp) protein (186aa)
Acetyltransferase, GNAT family n=1 Tax=Nitrosococcus oceani AFC27 RepID=B6C5H0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KFI18243.1}; TaxID=314279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani C-27.;"
GCN5-like N-acetyltransferase
SCNpilot_expt_500_bf_scaffold_3630_15
unknown

Not on your lists

14457..14645
DNA (189bp) protein (63aa)

This feature has no annotations

Displaying 15 items

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