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SCNpilot_expt_500_bf_scaffold_1885

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1885_1
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3..263
DNA (261bp) protein (87aa)
pyruvate dehydrogenase E1 subunit beta; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] id=12494006 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
pyruvate dehydrogenase E1 subunit beta; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1]
Pyruvate dehydrogenase E1 beta subunit {ECO:0000313|EMBL:AAZ96607.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_1885_2
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

694..3606
DNA (2913bp) protein (971aa)
dihydrolipoamide dehydrogenase (EC:1.8.1.4); K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] rbh
pyruvate dehydrogenase n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D2158 rbh
Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase E3 component {ECO:0000313|EMBL:AAZ96605.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCNpilot_expt_500_bf_scaffold_1885_3
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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3918..4520
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036E7358
hypothetical protein
Tax=CSP1_2_Dadabacteria
SCNpilot_expt_500_bf_scaffold_1885_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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4543..5277
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00036B8054
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1885_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5395..6552)
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000377D092
serine-type D-Ala-D-Ala carboxypeptidase rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1885_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7050..7727
DNA (678bp) protein (226aa)
dihydroorotate dehydrogenase 2 (EC:1.3.3.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
dihydroorotate dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI000371B737
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1885_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7834..8931
DNA (1098bp) protein (366aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00035C5841
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCNpilot_expt_500_bf_scaffold_1885_8
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8999..10081
DNA (1083bp) protein (361aa)
L-alanine dehydrogenase (EC:1.4.1.1); K00259 alanine dehydrogenase [EC:1.4.1.1]
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
alanine dehydrogenase n=1 Tax=Thiobacillus thioparus RepID=UPI00036495D6
SCNpilot_expt_500_bf_scaffold_1885_9
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10291..11295
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000370B854 rbh
Predicted transcriptional regulator {ECO:0000313|EMBL:BAO81056.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_1885_10
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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11308..13983
DNA (2676bp) protein (892aa)
CRISPR-associated helicase, Cas3 family n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ARI0_PELPD rbh
CRISPR-associated helicase Cas3; K07012 rbh
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
SCNpilot_expt_500_bf_scaffold_1885_11
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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13980..15527
DNA (1548bp) protein (516aa)
CRISPR-associated protein, Cse1 family n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ARH9_PELPD rbh
CRISPR-associated Cse1 family protein rbh
CRISPR-associated protein, Cse1 family {ECO:0000313|EMBL:ABK99949.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
SCNpilot_expt_500_bf_scaffold_1885_12
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15524..16039
DNA (516bp) protein (172aa)
CRISPR-associated protein, Cse2 family n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ARH8_PELPD
CRISPR-associated Cse2 family protein
CRISPR-associated protein, Cse2 family {ECO:0000313|EMBL:ABK99948.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
SCNpilot_expt_500_bf_scaffold_1885_13
GWA2_Elusimicrobia_51_34_curated, Elusimicrobia, Bacteria

Not on your lists

16036..17190
DNA (1155bp) protein (385aa)
CRISPR-ssociated protein, Cas4 id=4606570 bin=GWC2_Elusimicrobia_51_8 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia rbh
CRISPR-associated Cse4 family protein rbh
Tax=GWA2_Elusimicrobia_51_34_curated
SCNpilot_expt_500_bf_scaffold_1885_14
RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17194..17892
DNA (699bp) protein (233aa)
CRISPR-associated protein, Cas5e family id=2215477 bin=GWB2_Proteobacteria_55_19 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good rbh
CRISPR-associated Cas5 family protein rbh
Tax=RIFOXYD12_FULL_Deltaproteobacteria_55_16_curated
SCNpilot_expt_500_bf_scaffold_1885_15
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17879..18568
DNA (690bp) protein (230aa)
CRISPR-associated protein, Cse3 family n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ARH5_PELPD
CRISPR-associated Cse3 family protein
CRISPR-associated protein, Cse3 family {ECO:0000313|EMBL:ABK99945.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
SCNpilot_expt_500_bf_scaffold_1885_16
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18667..18906
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00037B3F42
Uncharacterized conserved protein {ECO:0000313|EMBL:BAO81049.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1885_17
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18903..19271
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00036B30DA
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:BAO81048.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1885_18
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19271..20191
DNA (921bp) protein (307aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
cas1; CRISPR-associated protein Cas1; K15342 CRISP-associated protein Cas1 id=12496790 bin=THIO_MID species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=THIO_MID organism_group=Betaproteobacteria
cas1; CRISPR-associated protein Cas1; K15342 CRISP-associated protein Cas1 rbh
SCNpilot_expt_500_bf_scaffold_1885_19
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20172..20468
DNA (297bp) protein (99aa)
cas2; CRISPR-associated protein Cas2 id=12496789 bin=THIO_MID species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=THIO_MID organism_group=Betaproteobacteria
CRISPR/Cas system-associated protein Cas2 {ECO:0000313|EMBL:BAO81046.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
cas2; CRISPR-associated protein Cas2
Displaying 19 items

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