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SCNpilot_expt_500_bf_scaffold_8295

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_8295_1
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(105..797)
DNA (693bp) protein (231aa)
Uncharacterized protein {ECO:0000313|EMBL:AHF86656.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_expt_500_bf_scaffold_8295_2
unknown

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comp(798..1259)
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_8295_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1261..2139)
DNA (879bp) protein (293aa)
Nucleotide binding protein n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C4A7_HYPNA
Uncharacterized protein {ECO:0000313|EMBL:AHF86658.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
nucleotide binding protein
SCNpilot_expt_500_bf_scaffold_8295_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2254..2934)
DNA (681bp) protein (227aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
urocanate hydratase (EC:4.2.1.49)
Urocanate hydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPD1_9GAMM
SCNpilot_expt_500_bf_scaffold_8295_5
unknown

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3727..3864
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_8295_6
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3904..5211)
DNA (1308bp) protein (436aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Two component system sensor protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WBB6_9GAMM rbh
two component system sensor protein rbh
SCNpilot_expt_500_bf_scaffold_8295_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5283..5690
DNA (408bp) protein (136aa)
Response regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4WBB7_9GAMM
Response regulator {ECO:0000313|EMBL:EIL96758.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
response regulator
SCNpilot_expt_500_bf_scaffold_8295_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5954..6511
DNA (558bp) protein (186aa)
Ketosteroid isomerase-like protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W012_9GAMM
Ketosteroid isomerase-like protein {ECO:0000313|EMBL:EIL92803.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ketosteroid isomerase-like enzyme
SCNpilot_expt_500_bf_scaffold_8295_9
unknown

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comp(6570..7490)
DNA (921bp) protein (307aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_8295_10
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7806..8012
DNA (207bp) protein (69aa)
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase (EC:3.2.2.21 2.1.1.63)
DNA methylase n=1 Tax=Dyella japonica RepID=UPI00030F2692
DNA methylase {ECO:0000313|EMBL:AIF48528.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_expt_500_bf_scaffold_8295_11
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8009..8542
DNA (534bp) protein (178aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; O-6-methylguanine-DNA-alkyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WGF5_9GAMM
O-6-methylguanine DNA methyltransferase
SCNpilot_expt_500_bf_scaffold_8295_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8543..8959)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WS12_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89449.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_8295_13
unknown

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comp(9122..9490)
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_8295_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9890..10243
DNA (354bp) protein (118aa)
Nucleotide pyrophosphatase n=1 Tax=Rhodanobacter denitrificans RepID=I4WS11_9GAMM
putative AP superfamily protein
Putative AP superfamily protein {ECO:0000313|EMBL:AGG89450.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_8295_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10321..10581)
DNA (261bp) protein (87aa)
Major facilitator family transporter n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W017_9GAMM
Major facilitator family transporter {ECO:0000313|EMBL:EIL92808.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
arabinose efflux permease family protein
Displaying 15 items

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