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SCNpilot_expt_500_bf_scaffold_3118

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3118_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..1411
DNA (1410bp) protein (470aa)
Tryptophan halogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0A8_9GAMM rbh
Tryptophan halogenase {ECO:0000313|EMBL:EIL92899.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
tryptophan halogenase
SCNpilot_expt_500_bf_scaffold_3118_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1449..2996)
DNA (1548bp) protein (516aa)
Glycoside hydrolase family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WQW8_9GAMM rbh
Xylan 1,4-beta-xylosidase {ECO:0000313|EMBL:EIL92900.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
beta-xylosidase rbh
SCNpilot_expt_500_bf_scaffold_3118_3
Cellvibrio japonicus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3137..3562)
DNA (426bp) protein (142aa)
Conserved domain protein n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PJH6_CELJU
hypothetical protein
Conserved domain protein {ECO:0000313|EMBL:ACE84190.1}; TaxID=498211 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp.; cellulosa).;"
SCNpilot_expt_500_bf_scaffold_3118_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3589..4320)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPA0_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL89041.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Ion channel rbh
SCNpilot_expt_500_bf_scaffold_3118_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4476..4877)
DNA (402bp) protein (134aa)
Lactoylglutathione lyase n=1 Tax=Rhodanobacter denitrificans RepID=I4WQH3_9GAMM
lactoylglutathione lyase-like lyase
Lactoylglutathione lyase-like lyase {ECO:0000313|EMBL:AGG87608.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3118_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5009..5740)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIR9_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL99360.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_3118_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5737..6228)
DNA (492bp) protein (164aa)
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Rhodanobacter denitrificans RepID=I4WY34_9GAMM rbh
RNA polymerase sigma factor, sigma-70 family rbh
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGG88721.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3118_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6350..7591
DNA (1242bp) protein (414aa)
Subtilisin-like serine protease n=2 Tax=Rhodanobacter denitrificans RepID=M4ND99_9GAMM rbh
subtilisin-like serine protease rbh
Subtilisin-like serine protease {ECO:0000313|EMBL:AGG88720.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3118_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8072..8635
DNA (564bp) protein (188aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NDC9_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_3118_10

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comp(8930..9274)
DNA (345bp) protein (115aa)
Putative integron gene cassette protein n=1 Tax=uncultured bacterium RepID=B0BHG9_9BACT
Putative integron gene cassette protein {ECO:0000313|EMBL:CAP48227.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_500_bf_scaffold_3118_11

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comp(10133..10513)
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium RepID=Q99IT3_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:AAK28608.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_500_bf_scaffold_3118_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11682..14033)
DNA (2352bp) protein (784aa)
Family 31 glycosyl hydrolase, alpha-glucosidase n=1 Tax=Rhodanobacter denitrificans RepID=M4NRI9_9GAMM rbh
family 31 glycosyl hydrolase, alpha-glucosidase rbh
Family 31 glycosyl hydrolase, alpha-glucosidase {ECO:0000313|EMBL:AGG90171.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3118_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14239..15708)
DNA (1470bp) protein (490aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Alpha amylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WQW5_9GAMM rbh
glycosidase rbh
Displaying 13 items

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