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SCNpilot_expt_500_bf_scaffold_3345

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3345_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..1200
DNA (1200bp) protein (400aa)
Short chain fatty acid transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WSX1_9GAMM
Short chain fatty acid transporter {ECO:0000313|EMBL:EIM02563.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
short chain fatty acids transporter
SCNpilot_expt_500_bf_scaffold_3345_2
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1242..2516)
DNA (1275bp) protein (425aa)
membrane protein n=1 Tax=Dyella japonica RepID=UPI0002FF6C39 rbh
Membrane protein {ECO:0000313|EMBL:AHX15848.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
ABC-type transport system, involved in lipoprotein release, permease component rbh
SCNpilot_expt_500_bf_scaffold_3345_3
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2528..3694)
DNA (1167bp) protein (389aa)
membrane protein n=1 Tax=Dyella japonica RepID=UPI0002F3DCC0 rbh
Membrane protein {ECO:0000313|EMBL:AIF46852.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
ABC-type transport system, involved in lipoprotein release, permease component rbh
SCNpilot_expt_500_bf_scaffold_3345_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3705..4391)
DNA (687bp) protein (229aa)
ABC transporter n=1 Tax=Rhodanobacter denitrificans RepID=I4WVU8_9GAMM rbh
ABC-type antimicrobial peptide transport system, ATPase component rbh
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:AGG90388.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3345_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4435..5676)
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W284_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL93575.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
RND family efflux transporter, MFP subunit rbh
SCNpilot_expt_500_bf_scaffold_3345_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5915..6601
DNA (687bp) protein (229aa)
2-keto-4-pentenoate hydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WT48_9GAMM rbh
2-keto-4-pentenoate hydratase {ECO:0000313|EMBL:EIM02640.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase rbh
SCNpilot_expt_500_bf_scaffold_3345_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6684..7097
DNA (414bp) protein (138aa)
Large-conductance mechanosensitive channel n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W286_9GAMM
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
large conductance mechanosensitive channel protein
SCNpilot_expt_500_bf_scaffold_3345_8
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7204..7398
DNA (195bp) protein (65aa)
Aminopeptidase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VS53_9GAMM
Aminopeptidase {ECO:0000313|EMBL:EIL90044.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative aminopeptidase
Displaying 8 items

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