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SCNpilot_expt_500_bf_scaffold_3612

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3612_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..356)
DNA (354bp) protein (118aa)
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
NADH-quinone oxidoreductase subunit D n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKF9_9GAMM
NADH dehydrogenase I, D subunit
SCNpilot_expt_500_bf_scaffold_3612_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(359..1087)
DNA (729bp) protein (243aa)
NADH:ubiquinone oxidoreductase 27 kD subunit (EC:1.6.5.3) rbh
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
NADH-quinone oxidoreductase subunit C n=1 Tax=Rhodanobacter denitrificans RepID=M4NF32_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_3612_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1096..1653)
DNA (558bp) protein (186aa)
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
NADH dehydrogenase subunit B (EC:1.6.5.3) rbh
NADH-quinone oxidoreductase subunit B n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKG1_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_3612_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1644..2033)
DNA (390bp) protein (130aa)
NADH:ubiquinone oxidoreductase subunit 3 (chain A) (EC:1.6.5.3)
NADH-quinone oxidoreductase subunit A n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKG2_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_3612_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2258..2611)
DNA (354bp) protein (118aa)
Type IV pilus assembly PilZ n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6I2_9GAMM
Tfp pilus assembly protein PilZ
Type IV pilus assembly PilZ {ECO:0000313|EMBL:EIL95073.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_500_bf_scaffold_3612_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2695..4959)
DNA (2265bp) protein (755aa)
Diguanylate cyclase, putative n=1 Tax=Rhodanobacter denitrificans RepID=I4WLR4_9GAMM rbh
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AGG88603.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein rbh
SCNpilot_expt_500_bf_scaffold_3612_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4931..5530)
DNA (600bp) protein (200aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6I1_9GAMM
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EIL95072.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein
SCNpilot_expt_500_bf_scaffold_3612_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5558..6544)
DNA (987bp) protein (329aa)
Putative LmbE-like protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLR3_9GAMM rbh
putative LmbE-like protein rbh
Putative LmbE-like protein {ECO:0000313|EMBL:AGG88602.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3612_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6544..7479)
DNA (936bp) protein (312aa)
DNA polymerase III, delta'' subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NLI9_9GAMM
DNA polymerase III, delta'' subunit
DNA polymerase III, delta'' subunit {ECO:0000313|EMBL:AGG88601.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3612_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7476..8117)
DNA (642bp) protein (214aa)
thymidylate kinase (EC:2.7.4.9) rbh
Thymidylate kinase {ECO:0000256|HAMAP-Rule:MF_00165}; EC=2.7.4.9 {ECO:0000256|HAMAP-Rule:MF_00165};; dTMP kinase {ECO:0000256|HAMAP-Rule:MF_00165}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Thymidylate kinase n=1 Tax=Rhodanobacter denitrificans RepID=M4ND06_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_3612_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8114..9148)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLR0_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG88599.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3612_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9145..9966)
DNA (822bp) protein (274aa)
4-amino-4-deoxychorismate lyase {ECO:0000313|EMBL:EIL99959.1}; EC=4.1.3.38 {ECO:0000313|EMBL:EIL99959.1};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
aminodeoxychorismate lyase apoprotein (EC:4.1.3.38) rbh
4-amino-4-deoxychorismate lyase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKG8_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_3612_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9966..11312)
DNA (1347bp) protein (449aa)
Anthranilate/para-aminobenzoate synthase component I n=1 Tax=Rhodanobacter denitrificans RepID=M4NF27_9GAMM rbh
anthranilate/para-aminobenzoate synthase component I rbh
Anthranilate/para-aminobenzoate synthase component I {ECO:0000313|EMBL:AGG88597.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_3612_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11324..11938)
DNA (615bp) protein (205aa)
3-oxoacyl-(acyl-carrier-protein) synthase II (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Rhodanobacter denitrificans RepID=I4WLQ7_9GAMM
Displaying 14 items

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