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SCNpilot_expt_500_bf_scaffold_16232

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_16232_1
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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119..442
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UF43_XANAP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBA16915.1}; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
SCNpilot_expt_500_bf_scaffold_16232_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1063..2289
DNA (1227bp) protein (409aa)
Aspartyl-tRNA ligase {ECO:0000313|EMBL:EIL96496.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EIL96496.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Aspartate--tRNA ligase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WAK5_9GAMM
aspartyl-tRNA synthetase
SCNpilot_expt_500_bf_scaffold_16232_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2339..3037
DNA (699bp) protein (233aa)
Lysophospholipase n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH8_9GAMM
lysophospholipase
Lysophospholipase {ECO:0000313|EMBL:AGG87877.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_16232_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3496..3744
DNA (249bp) protein (83aa)
Probable transcriptional regulatory protein UUA_11091 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGT3_9GAMM
Probable transcriptional regulatory protein UUA_11091 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA-binding regulatory protein, YebC/PmpR family
SCNpilot_expt_500_bf_scaffold_16232_5
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3778..4839
DNA (1062bp) protein (354aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VY14_9GAMM rbh
Holliday junction DNA helicase subunit RuvA rbh
SCNpilot_expt_500_bf_scaffold_16232_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4855..6732
DNA (1878bp) protein (626aa)
Probable potassium transport system protein kup n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYM7_9GAMM rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
K+ transporter
SCNpilot_expt_500_bf_scaffold_16232_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7207..7848
DNA (642bp) protein (214aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYM8_9GAMM
Holliday junction DNA helicase subunit RuvB
SCNpilot_expt_500_bf_scaffold_16232_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7841..8260
DNA (420bp) protein (140aa)
Tol-pal system-associated acyl-CoA thioesterase n=1 Tax=Rhodanobacter denitrificans RepID=M4NEE1_9GAMM
tol-pal system-associated acyl-CoA thioesterase
Tol-pal system-associated acyl-CoA thioesterase {ECO:0000313|EMBL:AGG87883.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_16232_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8301..8984
DNA (684bp) protein (228aa)
Cell division and transport-associated protein TolQ n=1 Tax=Rhodanobacter denitrificans RepID=I4WZH1_9GAMM rbh
Cell division and transport-associated protein TolQ rbh
Cell division and transport-associated protein TolQ {ECO:0000313|EMBL:AGG87884.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_16232_10
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9110..9376
DNA (267bp) protein (89aa)
TolR protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYN1_9GAMM
Cell division and transport-associated protein TolR
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_16232_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9586..10275
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYN2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92323.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
F0F1-type ATP synthase, beta subunit
SCNpilot_expt_500_bf_scaffold_16232_12
unknown

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comp(10262..10561)
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_16232_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10842..11558
DNA (717bp) protein (239aa)
translocation protein TolB n=1 Tax=Dyella ginsengisoli RepID=UPI000348EC94
tol-pal system beta propeller repeat protein TolB
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_16232_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11808..12317
DNA (510bp) protein (170aa)
Peptidoglycan-associated lipoprotein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYN4_9GAMM rbh
Peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:EIL92325.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
peptidoglycan-associated lipoprotein rbh
SCNpilot_expt_500_bf_scaffold_16232_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12359..12985
DNA (627bp) protein (209aa)
Tol-pal system protein YbgF n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VYN5_9GAMM
tol-pal system protein YbgF
Tol-pal system protein YbgF {ECO:0000313|EMBL:EIL92326.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_500_bf_scaffold_16232_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13856..14419
DNA (564bp) protein (188aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000256|HAMAP-Rule:MF_01633}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter t
7-cyano-7-deazaguanine synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGU6_9GAMM
queuosine biosynthesis protein QueC
Displaying 16 items

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