ggKbase home page

SCNpilot_expt_500_bf_scaffold_4641_4

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

near complete RP 46 / 55 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 2
Location: comp(2571..4082)

Top 3 Functional Annotations

Value Algorithm Source
Type VI secretion-associated protein, BMA_A0400 family n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T6_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 54.3
  • Coverage: 558.0
  • Bit_score: 563
  • Evalue 1.90e-157
  • rbh
Type VI secretion-associated protein, BMA_A0400 family {ECO:0000313|EMBL:EIL93077.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.3
  • Coverage: 558.0
  • Bit_score: 563
  • Evalue 2.70e-157
type VI secretion-associated protein, BMA_A0400 family similarity KEGG
DB: KEGG
  • Identity: 40.6
  • Coverage: 340.0
  • Bit_score: 215
  • Evalue 3.00e-53

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1512
GTGCCGTCCGCGGCCGCAGGCTTCTTCGGCAAGCTGCCCTGCGCGGGAGACTTCGTGCAGCGACGGCTGCCGGCCAGCTTCGTCGATGCCTGGGACCGGCACTTCGAGACAGCCGTGGCGCACAGCCGCGACGCGTTGGGCGATACCTGGCACGAGGCGTTCCACGCCAGCCCGGCGTGGCGTTTCGCACTCGCGCCGGGCGTATGCGGCGAGGCGGCGTGGGTTGGCGTCATGGGGCCGGGCGCCGATCGCGTGGGTCGCTGTTTTCCGATGGTGATCGCTGCGCCGCTCTCCGACGTTGCTGCAGCCATCGGCGATGGCGCGGAATGGTTCGAACGCGCCGAGCAGTTGCACCGCGCGGCGCAGGCCGATGCGGGCATCGGCGTGGACGACTTCGACGCGCAGGTCGCGGCCCTGGGCAGCCCGCTCGATGCCGGCCAGACGCGGCCCGATCCGTGGCGTGAGGTGGACTGGACAGCGGCCAGCCACTGGCGCCTGCCGTTGCCTGCGCATGGCGGTGCGACAGCCTTGGCTGATCTGTGGAAGCGCCTCGGCGCCGTCCCCGGGCGCTGGTGTCTGTGGTGGACCGATGGCGCGGGGCGCGTCCCGGCCAGTGTGCTGGCGACCGATGGCTTGCCCGGCGCCGAGGCTTACGCCGGCTTGCTCGACGCCGGGCAGGGCACGGCCGCGTGGCAGACGCTGGGCAGCTTCGAGCTTGCAACTCCGCGCGCAACCGCGCCACTGACGATGGACGCGCCACCACCGGTGGCCTCCATCAACTCCTGGCTGCCGGACGATCTCGACCTGCTTGCCGACCTGGGCGGCAGCTCGCCCGCCGCATCCACGGCCATGCCGCTCGGCGACGTGACCCTCGCGGCGGATGTCGCCGCGGCAGCGAACACGCCGGTCGCCGCCCTCGCCGTGCTGCAACGGCCGGAGGTGGGCCTGAGCCTGGTCGCCGCCGAGGTCGGCGTGGCCGAACTGATCGGCGGCATGCAGGTGCTGCGCACGCGCATCATGGCGTTGAACCCGCAACTGCGGCAGTTCGGCGAGGATCTCGTCGACCCGGTGCCGGAGGATTGCGCGGTGATCGCCGCGCACGTGGCCGACGGCCAGGCCGCATTGCTGCGTATCGGCGCGGCGGCAGGCTGGCATTGGCGGCACGGCCGGCTGCAACCGTTCTTCGCGCGCAGCGATGCGCCACCGGCCGCCAGCGCGAGCAACAGCAGCGACGACCTCGACGACCTGCTGTTCAGTCCCGTGTCGCTGGCTGCGCCCGGCCTGGGCGCGACCGCGCAGCCGACTTGCGGCGAAGTCAGCTGCGCGCTGCAGGCCGGCGACCGGCTGCTGCTGATGGCCTCGCACCCCTTGCTGCAGCTGCCGCCGGACTTGCTGGCGCGCAGCCTGGCCGCAGGCACCTGCAGCGAGGCGCGCGCACGCATCGCGGCGGCTGCCGGACTGGGCGCCAGTCCCGACCACTGGCCGTTGGCGGTCATTGAGGTGCACGCATGA
PROTEIN sequence
Length: 504
VPSAAAGFFGKLPCAGDFVQRRLPASFVDAWDRHFETAVAHSRDALGDTWHEAFHASPAWRFALAPGVCGEAAWVGVMGPGADRVGRCFPMVIAAPLSDVAAAIGDGAEWFERAEQLHRAAQADAGIGVDDFDAQVAALGSPLDAGQTRPDPWREVDWTAASHWRLPLPAHGGATALADLWKRLGAVPGRWCLWWTDGAGRVPASVLATDGLPGAEAYAGLLDAGQGTAAWQTLGSFELATPRATAPLTMDAPPPVASINSWLPDDLDLLADLGGSSPAASTAMPLGDVTLAADVAAAANTPVAALAVLQRPEVGLSLVAAEVGVAELIGGMQVLRTRIMALNPQLRQFGEDLVDPVPEDCAVIAAHVADGQAALLRIGAAAGWHWRHGRLQPFFARSDAPPAASASNSSDDLDDLLFSPVSLAAPGLGATAQPTCGEVSCALQAGDRLLLMASHPLLQLPPDLLARSLAAGTCSEARARIAAAAGLGASPDHWPLAVIEVHA*