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SCNpilot_expt_500_bf_scaffold_4641

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_4641_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..960)
DNA (960bp) protein (320aa)
protein kinase (EC:2.7.11.1); K08282 non-specific serine/threonine protein kinase [EC:2.7.11.1]
Protein kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T8_9GAMM
Protein kinase {ECO:0000313|EMBL:EIL93079.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_500_bf_scaffold_4641_2
unknown

Not on your lists

comp(960..1778)
DNA (819bp) protein (273aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_4641_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1917..2339)
DNA (423bp) protein (141aa)
protein serine/threonine phosphatase; K01090 protein phosphatase [EC:3.1.3.16]
Protein phosphatase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WU23_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_4641_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2571..4082)
DNA (1512bp) protein (504aa)
Type VI secretion-associated protein, BMA_A0400 family n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T6_9GAMM rbh
Type VI secretion-associated protein, BMA_A0400 family {ECO:0000313|EMBL:EIL93077.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
type VI secretion-associated protein, BMA_A0400 family
SCNpilot_expt_500_bf_scaffold_4641_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4087..6447)
DNA (2361bp) protein (787aa)
Type VI secretion protein IcmF n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T5_9GAMM
Type VI secretion protein IcmF {ECO:0000313|EMBL:EIL93076.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
type VI secretion protein IcmF; K11891 type VI secretion system protein ImpL
SCNpilot_expt_500_bf_scaffold_4641_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6444..7580)
DNA (1137bp) protein (379aa)
Type VI secretion protein IcmF n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T5_9GAMM
Type VI secretion protein IcmF {ECO:0000313|EMBL:EIL93076.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein; K11891 type VI secretion system protein ImpL
SCNpilot_expt_500_bf_scaffold_4641_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7586..7873)
DNA (288bp) protein (96aa)
Type IV / VI secretion system protein, DotU family n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T4_9GAMM
Type IV / VI secretion system protein, DotU family {ECO:0000313|EMBL:EIL93075.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
type IV / VI secretion system protein, DotU family; K11892 type VI secretion system protein ImpK
SCNpilot_expt_500_bf_scaffold_4641_8
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8912..9529)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T3_9GAMM
hypothetical protein; K11893 type VI secretion system protein ImpJ
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_4641_9
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9505..10218)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T3_9GAMM
hypothetical protein; K11893 type VI secretion system protein ImpJ
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_4641_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10190..11710)
DNA (1521bp) protein (507aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T2_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL93073.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
FHA-domain-containing protein
SCNpilot_expt_500_bf_scaffold_4641_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11972..12514)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93072.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4641_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12526..14487)
DNA (1962bp) protein (654aa)
Type VI secretion system Vgr family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T0_9GAMM rbh
Type VI secretion system Vgr family protein {ECO:0000313|EMBL:EIL93071.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4641_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14600..15979)
DNA (1380bp) protein (460aa)
Methyltransferase type 12 n=3 Tax=mine drainage metagenome RepID=T1CJS8_9ZZZZ rbh
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_4641_14

Not on your lists

comp(16058..16345)
DNA (288bp) protein (96aa)
PAAR repeat-containing protein n=1 Tax=mine drainage metagenome RepID=T1AQN3_9ZZZZ
PAAR repeat-containing protein {ECO:0000313|EMBL:EQD44370.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_4641_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17858..21739)
DNA (3882bp) protein (1294aa)
TIGR02099 family protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NC28_9GAMM rbh
TIGR02099 family protein {ECO:0000313|EMBL:AGG88169.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
TIGR02099 family protein rbh
SCNpilot_expt_500_bf_scaffold_4641_16
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21761..23194)
DNA (1434bp) protein (478aa)
Ribonuclease G n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL36_9GAMM
ribonuclease, Rne/Rng family
Ribonuclease G {ECO:0000313|EMBL:EIM00178.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCNpilot_expt_500_bf_scaffold_4641_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23433..24038
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ31_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92472.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
PP-loop superfamily ATP-utilizing enzyme
SCNpilot_expt_500_bf_scaffold_4641_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24022..24537
DNA (516bp) protein (172aa)
G:T/U mismatch-specific DNA glycosylase (EC:3.2.2.-)
G:T/U mismatch-specific DNA glycosylase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ32_9GAMM
G:T/U mismatch-specific DNA glycosylase {ECO:0000313|EMBL:EIL92473.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_500_bf_scaffold_4641_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24551..25321)
DNA (771bp) protein (257aa)
Cytochrome c553 n=1 Tax=Rhodanobacter denitrificans RepID=M4NC23_9GAMM
cytochrome c553
Cytochrome c553 {ECO:0000313|EMBL:AGG88164.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_4641_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25417..26970
DNA (1554bp) protein (518aa)
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NF09_9GAMM rbh
amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit rbh
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:AGG88163.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_500_bf_scaffold_4641_21
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27366..28523
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida S11 RepID=J8UT97_PSEPU
Uncharacterized protein {ECO:0000313|EMBL:EJT83086.1}; TaxID=1218169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida S11.;"
SCNpilot_expt_500_bf_scaffold_4641_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28343..28846)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034DF1C2
Disulfide bond formation protein B {ECO:0000256|HAMAP-Rule:MF_00286}; Disulfide oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00286}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
disulfide bond formation protein DsbB
SCNpilot_expt_500_bf_scaffold_4641_23
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(29022..29405)
DNA (384bp) protein (128aa)
50S ribosomal protein L17 n=1 Tax=Rhodanobacter denitrificans RepID=I4WKT8_9GAMM
LSU ribosomal protein L17P
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_4641_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29610..30608)
DNA (999bp) protein (333aa)
DNA-directed RNA polymerase, alpha subunit (EC:2.7.7.6) rbh
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
DNA-directed RNA polymerase subunit alpha n=2 Tax=Rhodanobacter RepID=I4WKT7_9GAMM rbh
SCNpilot_expt_500_bf_scaffold_4641_25
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(30656..31225)
DNA (570bp) protein (190aa)
30S ribosomal protein S4 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VM94_9GAMM
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SSU ribosomal protein S4P
SCNpilot_expt_500_bf_scaffold_4641_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(31293..31787)
DNA (495bp) protein (165aa)
30S ribosomal protein S11 n=3 Tax=Rhodanobacter RepID=I4WKT5_9GAMM
SSU ribosomal protein S11P
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_expt_500_bf_scaffold_4641_27
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(31744..32100)
DNA (357bp) protein (119aa)
30S ribosomal protein S13 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL48_9GAMM
30S ribosomal protein S13
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_500_bf_scaffold_4641_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(32183..33235)
DNA (1053bp) protein (351aa)
Protein translocase subunit SecY n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL49_9GAMM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
preprotein translocase, SecY subunit
SCNpilot_expt_500_bf_scaffold_4641_29
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(33448..33879)
DNA (432bp) protein (144aa)
50S ribosomal protein L15 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNK7_9GAMM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
LSU ribosomal protein L15P
SCNpilot_expt_500_bf_scaffold_4641_30
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(33885..34082)
DNA (198bp) protein (66aa)
50S ribosomal protein L30 n=1 Tax=Rhodanobacter denitrificans RepID=I4WKT1_9GAMM
LSU ribosomal protein L30P
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying items 1-30 of 31 in total

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