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SCNpilot_expt_500_bf_scaffold_4641_5

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

near complete RP 46 / 55 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 2
Location: comp(4087..6447)

Top 3 Functional Annotations

Value Algorithm Source
Type VI secretion protein IcmF n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0T5_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 86.4
  • Coverage: 787.0
  • Bit_score: 1375
  • Evalue 0.0
Type VI secretion protein IcmF {ECO:0000313|EMBL:EIL93076.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.4
  • Coverage: 787.0
  • Bit_score: 1375
  • Evalue 0.0
type VI secretion protein IcmF; K11891 type VI secretion system protein ImpL similarity KEGG
DB: KEGG
  • Identity: 53.4
  • Coverage: 800.0
  • Bit_score: 831
  • Evalue 1.80e-238

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2361
ATGATGGGCGCGGTGGCGCGCACCTTCGGGCTGGACGCCTCGCGCCTGCACGTGCCCGGCGCGCAGAGCCGCACTTTCTTCGTCGAGCGTCTGCTCAAGGACGTGCTGTTCCGCGAATCGGGCTTCGCCGGCACCGATCCCAAGCTGGAGCGCCAGAAGGTGCTGCTGCAGGCGGCCTGCTACATCGGCGTGCTGCTGGCCTGCGGCCTGCTGGTGTTCGGCCTGGCCACCAGCTATCGGCGCAACGGCAATTATCTGGCCGACGTGCACACGGCGCTGGCCAAGTATCCGGCGCAGAGCGATCTCTCGCTGGCGCCGAACCAGCAGGCGTATTTCGCGCTGGTGCTGGAGCGGCTGGAAGCGCTGTCCGCGGCGGTCGACGTGGCCGACCAGCACCAGGGCGACGTGCCGCTGTCGATGCGCCTGGGCCTGTACCAGGGCAACGCGGTGGGCGACGAGGTGCGCGATGCGTACTACCGCGAGCTCAACGCGATCCTGCTGCCCGGCGTGGCCTCGCAGTTCCGCGCCGGGCTGGCCGCCAACGCCGGCGACCCGCAGATGCTTTATTACTACCTGAAGGGTTACCTGATGCTGGGCGAGCCCAAGCATCTGGACCACGACCAGATCGTGGCGCTGGCCGGGGTCGAGTGGCAGCGCCTGTTTCCGAACGACCCGGTGCTGCAGAAGGCGCTGAGCAAGCACTTCGACGCACTGGTCGCGCACGAGGGGCGCCTGCGCCCGCTGAGCCTGGACGACAACCTGGTCGAGCAGGCGCGCAGCACGCTGCGCACCGCGGACCTTGCCACGCTGATCTACGGCAACCTCAAGCTCACCGCCGGCAGCGGCAACTACCCGCCGCTGCGGCTGGACAAGGAACTGGGCCTGCTCGGCAACGTGTACCAGCGGCGCAGCGGCAAACCGCTGTCCGATCCGATCCCGGCGTTGTTCACCCAGCCGGTGTTCAAGCATGAGGTGGACAAGGGCATCGAACAGTCGGTGGCGCAGTTCGCCGCGGACGACTGGGTCTTCGGCGCCACCAAGATCGACGCGGTGCAGAAGGCTCAGCTCGCGCAACAGGTGCTCGGGCTTTACGAGCAGGACTACATCAAGGCCTGGGACGATGTTCTCGCCGACCTGCAACTGCAGCCGATCAACAACATCCAGGACGCCAGCGCCATCGCCGCCAAGCTGGCCGGCCCCAACTCGCCGCTGAAGCTGCTGCTCAAGGTGGTGCGCGACAACACCAGCGACCTGATGCGCGCGCCGCCCGGCGATGCCGCCGACAAGGCCGAGGACGTGGCCAAGAAGCTGGCGCAGCAGCGTGCCACGCAAACTGCGCTGGCGCGGGCGCTGGCGCAGGCCGGGGCCACCGGTGCGGCGGGTGGCGATGCAGCCAGCGAGAAACCGGGCAAGGTCATCAGTGACCATTTCGCCGAGATCGACAAGCTCACCGAGGGCGCGCCCGGCGCGCAGCCGATCGACCAGACCCTGAAGACGCTGGACGACCTCAGCAAGACCTTGCTGACCATGGGCGATTTCAGCAACGCGGCCGGCCAGCCCAACCCGCAGTTGCTGCTGGCCCAGCAGGCTGCGGCGCAACTCCCGCCGCCGGCCTCCAACTGGTTTGCCGCACTCACCGGCAAGAGCCAGGCGCTGGTGGCCAGCGGCACCAAGAGCGCGCTGGACGACCAGTACCAGCAGGCCGTCGGCAAGGACTGCGCCGACTTCACCCGCGGACGCTACCCGTTCTCGCCGTCGAGCAACAACGACATCCCGCTGCAGAACTTCGGCGAGCTGTTCGGCTATGGCGGTCGCTTCGACAGCTTCTACAACCAGACCGCCGGCAAGCTGATCGACGCCAGTGGCCGCAACTGGCAATGGAAGACCGGGCCCGGCGCGATCAGCGGCTCGGCCGGAATGCTGGGTCAGTTGCAGGGCGCCGACCGGATCAAGCAGATGTTCTTCCGCAGCGGCAACCTGCCGGAAGTCGATTTCACCTGGCTCACGCCGGTGCTTGATGCCGGCATCGGCAAGCTGGTGATCGACGTCGACGGGCAGAAATACGAATACCAGCCGGGTGGCGCGACCAACGTCAGCATGAAATGGCCCGGACCGCAGCCGGGCCGCGTCTCCATCTCCGCCTACGACACCGCCGGCAACCTGCTCACCACGTTCGACTATCGCGGCGACTGGGCGTTCTTCCGCGCACTGCAGGCGGCCAACCTGCAGAAGCAGTCCGACCTGCGCTTCGTGGCCAGTTTCAATTTCGGCGGCCACGTGGCGAAGGTGACGCTGCAAGCCAACAACCTGAAGAATCCGTTCCTCAGCAACGCCCTGTCCAGCTTCCGGTGCGGAGGCTGA
PROTEIN sequence
Length: 787
MMGAVARTFGLDASRLHVPGAQSRTFFVERLLKDVLFRESGFAGTDPKLERQKVLLQAACYIGVLLACGLLVFGLATSYRRNGNYLADVHTALAKYPAQSDLSLAPNQQAYFALVLERLEALSAAVDVADQHQGDVPLSMRLGLYQGNAVGDEVRDAYYRELNAILLPGVASQFRAGLAANAGDPQMLYYYLKGYLMLGEPKHLDHDQIVALAGVEWQRLFPNDPVLQKALSKHFDALVAHEGRLRPLSLDDNLVEQARSTLRTADLATLIYGNLKLTAGSGNYPPLRLDKELGLLGNVYQRRSGKPLSDPIPALFTQPVFKHEVDKGIEQSVAQFAADDWVFGATKIDAVQKAQLAQQVLGLYEQDYIKAWDDVLADLQLQPINNIQDASAIAAKLAGPNSPLKLLLKVVRDNTSDLMRAPPGDAADKAEDVAKKLAQQRATQTALARALAQAGATGAAGGDAASEKPGKVISDHFAEIDKLTEGAPGAQPIDQTLKTLDDLSKTLLTMGDFSNAAGQPNPQLLLAQQAAAQLPPPASNWFAALTGKSQALVASGTKSALDDQYQQAVGKDCADFTRGRYPFSPSSNNDIPLQNFGELFGYGGRFDSFYNQTAGKLIDASGRNWQWKTGPGAISGSAGMLGQLQGADRIKQMFFRSGNLPEVDFTWLTPVLDAGIGKLVIDVDGQKYEYQPGGATNVSMKWPGPQPGRVSISAYDTAGNLLTTFDYRGDWAFFRALQAANLQKQSDLRFVASFNFGGHVAKVTLQANNLKNPFLSNALSSFRCGG*