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SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_EXPT_500_BF_STEP10_unknown_33_6
In projects: SCNPILOT_EXPT_500_BF_STEP10

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCNpilot_expt_500_bf_step10_UNK

Properties

Avg. coverage: 5.84 Longest contig: 82.07 Kbp Bin length: 61.23 Mbp GC content: 33.00 %
Contigs count: 8385 Features count: 70688 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 35 BSCG 20 / 51 MC: 9 ASCG 28 / 38 MC: 22
Displaying items 201-250 of 8385 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_bf_scaffold_1027 34 29823 bp 33.36 6.30 38.65
SCNpilot_expt_500_bf_scaffold_1550 34 32231 bp 31.87 5.83 38.66
SCNpilot_expt_500_bf_scaffold_2799 34 23577 bp 34.73 5.84 53.42
SCNpilot_expt_500_bf_scaffold_2311 34 29675 bp 33.02 5.79 48.48
SCNpilot_expt_500_bf_scaffold_828 34 32506 bp 33.32 6.07 46.36
SCNpilot_expt_500_bf_scaffold_2334 34 29611 bp 33.27 5.59 57.79
SCNpilot_expt_500_bf_scaffold_1109 34 33785 bp 31.56 6.10 45.40
SCNpilot_expt_500_bf_scaffold_3256
Domain: Metazoa (50%)
34 21774 bp 33.40 6.26 60.50
SCNpilot_expt_500_bf_scaffold_1153 34 24129 bp 34.07 5.55 61.03
SCNpilot_expt_500_bf_scaffold_1410 34 24758 bp 33.60 6.18 58.73
SCNpilot_expt_500_bf_scaffold_913
Domain: Metazoa (55.88%)
34 25884 bp 33.77 5.75 62.97
SCNpilot_expt_500_bf_scaffold_1943 34 23315 bp 32.46 6.06 42.49
SCNpilot_expt_500_bf_scaffold_1714 34 37776 bp 31.89 5.78 29.30
SCNpilot_expt_500_bf_scaffold_1727 34 25989 bp 33.97 6.51 68.46
SCNpilot_expt_500_bf_scaffold_1235 34 33096 bp 30.35 6.25 72.96
SCNpilot_expt_500_bf_scaffold_469 34 29161 bp 31.80 6.35 51.82
SCNpilot_expt_500_bf_scaffold_3125 34 25659 bp 32.19 5.85 42.86
SCNpilot_expt_500_bf_scaffold_2231 34 25307 bp 33.77 5.51 49.30
SCNpilot_expt_500_bf_scaffold_1558 33 27355 bp 32.53 6.10 31.69
SCNpilot_expt_500_bf_scaffold_1047 33 26057 bp 34.61 6.02 64.23
SCNpilot_expt_500_bf_scaffold_2038 33 21241 bp 31.90 5.40 44.88
SCNpilot_expt_500_bf_scaffold_1835 33 25177 bp 36.74 5.64 46.23
SCNpilot_expt_500_bf_scaffold_814 33 26623 bp 33.13 5.33 38.12
SCNpilot_expt_500_bf_scaffold_2306 33 29950 bp 33.44 5.99 52.96
SCNpilot_expt_500_bf_scaffold_1082 33 21420 bp 32.53 6.27 52.56
SCNpilot_expt_500_bf_scaffold_577 33 28827 bp 34.87 5.51 41.31
SCNpilot_expt_500_bf_scaffold_578 33 24708 bp 34.38 5.50 42.64
SCNpilot_expt_500_bf_scaffold_2073 33 26003 bp 31.18 6.06 55.42
SCNpilot_expt_500_bf_scaffold_606 33 28486 bp 33.47 5.30 42.94
SCNpilot_expt_500_bf_scaffold_871 33 26419 bp 33.98 5.30 45.92
SCNpilot_expt_500_bf_scaffold_2872 33 24844 bp 31.83 5.66 47.78
SCNpilot_expt_500_bf_scaffold_4978
Domain: Metazoa (51.52%)
33 26945 bp 32.55 5.37 58.24
SCNpilot_expt_500_bf_scaffold_1905 33 22939 bp 33.21 6.91 45.30
SCNpilot_expt_500_bf_scaffold_3541 33 33719 bp 32.19 6.08 66.35
SCNpilot_expt_500_bf_scaffold_3557 33 24190 bp 32.79 6.06 49.86
SCNpilot_expt_500_bf_scaffold_677 33 37406 bp 32.76 6.04 41.24
SCNpilot_expt_500_bf_scaffold_1206 33 21918 bp 32.30 6.49 53.89
SCNpilot_expt_500_bf_scaffold_697 33 32844 bp 31.56 6.00 41.22
SCNpilot_expt_500_bf_scaffold_2189 33 24381 bp 33.26 6.33 53.34
SCNpilot_expt_500_bf_scaffold_4040 33 25445 bp 32.50 5.94 51.59
SCNpilot_expt_500_bf_scaffold_1989
Domain: Metazoa (60.61%)
33 28874 bp 34.71 5.62 69.20
SCNpilot_expt_500_bf_scaffold_998 33 26166 bp 33.33 5.94 49.01
SCNpilot_expt_500_bf_scaffold_1012 32 29383 bp 34.81 5.92 51.85
SCNpilot_expt_500_bf_scaffold_1275 32 22589 bp 33.01 5.83 56.38
SCNpilot_expt_500_bf_scaffold_1043 32 30760 bp 32.86 5.59 60.75
SCNpilot_expt_500_bf_scaffold_1051 32 23931 bp 32.06 6.10 48.66
SCNpilot_expt_500_bf_scaffold_3210 32 28920 bp 32.64 5.22 34.40
SCNpilot_expt_500_bf_scaffold_1853
Domain: Metazoa (81.25%)
32 19901 bp 35.24 6.13 65.38
SCNpilot_expt_500_bf_scaffold_1089 32 39839 bp 31.80 5.77 32.60
SCNpilot_expt_500_bf_scaffold_2071 32 31322 bp 32.57 5.92 55.51
Displaying items 201-250 of 8385 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.